Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HOXA1P49639 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HOXA1P49639 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXA1P49639 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC13.34□□□□□ -0.27
HOXA1P49639 ISCU-203ENST00000431221 799 ntTSL 2 BASIC13.34□□□□□ -0.27
HOXA1P49639 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC13.34□□□□□ -0.27
HOXA1P49639 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC13.34□□□□□ -0.27
HOXA1P49639 MSRA-206ENST00000521209 814 ntTSL 3 BASIC13.34□□□□□ -0.27
HOXA1P49639 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC13.34□□□□□ -0.27
HOXA1P49639 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC13.34□□□□□ -0.27
HOXA1P49639 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXA1P49639 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HOXA1P49639 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXA1P49639 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXA1P49639 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXA1P49639 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
HOXA1P49639 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HOXA1P49639 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HOXA1P49639 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC13.34□□□□□ -0.27
HOXA1P49639 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC13.34□□□□□ -0.27
HOXA1P49639 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXA1P49639 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXA1P49639 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
HOXA1P49639 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HOXA1P49639 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.27
HOXA1P49639 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.27
HOXA1P49639 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.27
HOXA1P49639 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
HOXA1P49639 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC13.33□□□□□ -0.27
HOXA1P49639 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
HOXA1P49639 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
HOXA1P49639 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.27
HOXA1P49639 PI4KAP1-204ENST00000612579 1703 ntBASIC13.33□□□□□ -0.27
HOXA1P49639 AC131009.4-201ENST00000624048 1740 ntBASIC13.33□□□□□ -0.27
HOXA1P49639 BMT2-201ENST00000297145 3981 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
HOXA1P49639 AC232323.1-201ENST00000540724 2099 ntBASIC13.33□□□□□ -0.27
HOXA1P49639 REXO1L5P-201ENST00000622260 2098 ntBASIC13.33□□□□□ -0.27
HOXA1P49639 TMPRSS3-203ENST00000398405 2754 ntAPPRIS ALT1 TSL 5 BASIC13.33□□□□□ -0.27
HOXA1P49639 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
HOXA1P49639 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HOXA1P49639 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXA1P49639 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC13.33□□□□□ -0.28
HOXA1P49639 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC13.33□□□□□ -0.28
HOXA1P49639 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC13.33□□□□□ -0.28
HOXA1P49639 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC13.33□□□□□ -0.28
HOXA1P49639 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXA1P49639 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXA1P49639 SNX33P1-201ENST00000592116 1762 ntBASIC13.33□□□□□ -0.28
HOXA1P49639 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXA1P49639 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
HOXA1P49639 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXA1P49639 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXA1P49639 OS9-201ENST00000257966 2505 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
HOXA1P49639 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXA1P49639 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC13.33□□□□□ -0.28
HOXA1P49639 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXA1P49639 RBM17P3-201ENST00000417687 1192 ntBASIC13.33□□□□□ -0.28
HOXA1P49639 CDK2AP2P3-201ENST00000422476 372 ntBASIC13.33□□□□□ -0.28
HOXA1P49639 WDR53-204ENST00000433160 887 ntTSL 5 BASIC13.33□□□□□ -0.28
HOXA1P49639 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HOXA1P49639 POU5F1P6-201ENST00000466990 990 ntBASIC13.33□□□□□ -0.28
HOXA1P49639 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC13.33□□□□□ -0.28
HOXA1P49639 AC139887.3-201ENST00000568585 713 ntBASIC13.33□□□□□ -0.28
HOXA1P49639 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC13.33□□□□□ -0.28
HOXA1P49639 NKAPP1-205ENST00000585790 367 ntBASIC13.33□□□□□ -0.28
HOXA1P49639 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC13.33□□□□□ -0.28
HOXA1P49639 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXA1P49639 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HOXA1P49639 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC13.33□□□□□ -0.28
HOXA1P49639 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
HOXA1P49639 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HOXA1P49639 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXA1P49639 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC13.33□□□□□ -0.28
HOXA1P49639 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC13.33□□□□□ -0.28
HOXA1P49639 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
HOXA1P49639 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC13.33□□□□□ -0.28
HOXA1P49639 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HOXA1P49639 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC13.33□□□□□ -0.28
HOXA1P49639 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXA1P49639 CARHSP1-217ENST00000611932 2833 ntAPPRIS P1 TSL 3 BASIC13.33□□□□□ -0.28
HOXA1P49639 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC13.33□□□□□ -0.28
HOXA1P49639 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HOXA1P49639 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC13.33□□□□□ -0.28
HOXA1P49639 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXA1P49639 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXA1P49639 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
HOXA1P49639 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC13.33□□□□□ -0.28
HOXA1P49639 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
HOXA1P49639 GALC-206ENST00000544807 2528 ntTSL 2 BASIC13.33□□□□□ -0.28
HOXA1P49639 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HOXA1P49639 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC13.32□□□□□ -0.28
HOXA1P49639 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXA1P49639 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HOXA1P49639 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXA1P49639 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
HOXA1P49639 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HOXA1P49639 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
HOXA1P49639 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
HOXA1P49639 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC13.32□□□□□ -0.28
HOXA1P49639 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms