Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.1
CXCL12P48061 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
CXCL12P48061 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.1
CXCL12P48061 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.1
CXCL12P48061 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
CXCL12P48061 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
CXCL12P48061 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC15.7■□□□□ 0.1
CXCL12P48061 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC15.7■□□□□ 0.1
CXCL12P48061 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC15.7■□□□□ 0.1
CXCL12P48061 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC15.7■□□□□ 0.1
CXCL12P48061 TK1-203ENST00000588734 1681 ntTSL 2 BASIC15.7■□□□□ 0.1
CXCL12P48061 TP73-209ENST00000603362 1668 ntTSL 5 BASIC15.7■□□□□ 0.1
CXCL12P48061 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CXCL12P48061 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC15.7■□□□□ 0.1
CXCL12P48061 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CXCL12P48061 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CXCL12P48061 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC15.7■□□□□ 0.1
CXCL12P48061 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CXCL12P48061 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
CXCL12P48061 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CXCL12P48061 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CXCL12P48061 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CXCL12P48061 AL133267.1-201ENST00000398220 340 ntBASIC15.7■□□□□ 0.1
CXCL12P48061 CD8B2-202ENST00000417670 633 ntBASIC15.7■□□□□ 0.1
CXCL12P48061 PTPA-218ENST00000435132 618 ntTSL 2 BASIC15.7■□□□□ 0.1
CXCL12P48061 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC15.7■□□□□ 0.1
CXCL12P48061 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC15.7■□□□□ 0.1
CXCL12P48061 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC15.7■□□□□ 0.1
CXCL12P48061 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
CXCL12P48061 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CXCL12P48061 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC15.7■□□□□ 0.1
CXCL12P48061 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC15.7■□□□□ 0.1
CXCL12P48061 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CXCL12P48061 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CXCL12P48061 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CXCL12P48061 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC15.7■□□□□ 0.1
CXCL12P48061 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CXCL12P48061 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CXCL12P48061 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC15.7■□□□□ 0.1
CXCL12P48061 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC15.7■□□□□ 0.1
CXCL12P48061 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC15.7■□□□□ 0.1
CXCL12P48061 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
CXCL12P48061 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CXCL12P48061 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC15.7■□□□□ 0.1
CXCL12P48061 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC15.69■□□□□ 0.1
CXCL12P48061 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
CXCL12P48061 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CXCL12P48061 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CXCL12P48061 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC15.69■□□□□ 0.1
CXCL12P48061 AC139713.2-201ENST00000641328 2723 ntBASIC15.69■□□□□ 0.1
CXCL12P48061 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CXCL12P48061 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC15.69■□□□□ 0.1
CXCL12P48061 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC15.69■□□□□ 0.1
CXCL12P48061 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CXCL12P48061 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CXCL12P48061 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CXCL12P48061 HNRNPA1P32-201ENST00000396326 963 ntBASIC15.69■□□□□ 0.1
CXCL12P48061 MPV17-205ENST00000402310 906 ntTSL 5 BASIC15.69■□□□□ 0.1
CXCL12P48061 MIR663B-201ENST00000408361 115 ntBASIC15.69■□□□□ 0.1
CXCL12P48061 NUS1P3-201ENST00000423502 862 ntBASIC15.69■□□□□ 0.1
CXCL12P48061 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC15.69■□□□□ 0.1
CXCL12P48061 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC15.69■□□□□ 0.1
CXCL12P48061 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC15.69■□□□□ 0.1
CXCL12P48061 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC15.69■□□□□ 0.1
CXCL12P48061 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC15.69■□□□□ 0.1
CXCL12P48061 REEP1-202ENST00000453231 940 ntTSL 2 BASIC15.69■□□□□ 0.1
CXCL12P48061 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC15.69■□□□□ 0.1
CXCL12P48061 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
CXCL12P48061 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
CXCL12P48061 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC15.69■□□□□ 0.1
CXCL12P48061 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC15.69■□□□□ 0.1
CXCL12P48061 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CXCL12P48061 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC15.69■□□□□ 0.1
CXCL12P48061 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CXCL12P48061 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CXCL12P48061 UBALD1-205ENST00000590891 2641 ntBASIC15.69■□□□□ 0.1
CXCL12P48061 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
CXCL12P48061 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
CXCL12P48061 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
CXCL12P48061 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
CXCL12P48061 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CXCL12P48061 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
CXCL12P48061 FZD10-202ENST00000539839 3282 ntBASIC15.69■□□□□ 0.1
CXCL12P48061 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CXCL12P48061 FOS-202ENST00000535987 1402 ntTSL 2 BASIC15.68■□□□□ 0.1
CXCL12P48061 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CXCL12P48061 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC15.68■□□□□ 0.1
CXCL12P48061 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CXCL12P48061 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
CXCL12P48061 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC15.68■□□□□ 0.1
CXCL12P48061 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CXCL12P48061 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CXCL12P48061 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CXCL12P48061 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
CXCL12P48061 AC007613.1-201ENST00000572811 2597 ntBASIC15.68■□□□□ 0.1
CXCL12P48061 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC15.68■□□□□ 0.1
CXCL12P48061 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CXCL12P48061 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
CXCL12P48061 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC15.68■□□□□ 0.1
CXCL12P48061 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms