Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HTTP42858 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HTTP42858 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC17.5■□□□□ 0.39
HTTP42858 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HTTP42858 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
HTTP42858 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC17.5■□□□□ 0.39
HTTP42858 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC17.5■□□□□ 0.39
HTTP42858 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
HTTP42858 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
HTTP42858 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
HTTP42858 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HTTP42858 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HTTP42858 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HTTP42858 AL133466.1-201ENST00000447582 150 ntBASIC17.5■□□□□ 0.39
HTTP42858 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
HTTP42858 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC17.5■□□□□ 0.39
HTTP42858 MIR4754-201ENST00000582477 89 ntBASIC17.5■□□□□ 0.39
HTTP42858 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC17.5■□□□□ 0.39
HTTP42858 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HTTP42858 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HTTP42858 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC17.5■□□□□ 0.39
HTTP42858 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HTTP42858 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
HTTP42858 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC17.5■□□□□ 0.39
HTTP42858 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
HTTP42858 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HTTP42858 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC17.5■□□□□ 0.39
HTTP42858 SLC16A6P1-201ENST00000413214 1059 ntBASIC17.5■□□□□ 0.39
HTTP42858 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC17.5■□□□□ 0.39
HTTP42858 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC17.5■□□□□ 0.39
HTTP42858 AC116345.2-201ENST00000512837 523 ntBASIC17.5■□□□□ 0.39
HTTP42858 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
HTTP42858 MEG3_2.1-201ENST00000611456 105 ntBASIC17.5■□□□□ 0.39
HTTP42858 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
HTTP42858 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
HTTP42858 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HTTP42858 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC17.49■□□□□ 0.39
HTTP42858 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC17.49■□□□□ 0.39
HTTP42858 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HTTP42858 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC17.49■□□□□ 0.39
HTTP42858 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
HTTP42858 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
HTTP42858 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HTTP42858 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HTTP42858 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
HTTP42858 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC17.49■□□□□ 0.39
HTTP42858 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC17.49■□□□□ 0.39
HTTP42858 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC17.49■□□□□ 0.39
HTTP42858 UBL5-208ENST00000593087 320 ntTSL 3 BASIC17.49■□□□□ 0.39
HTTP42858 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HTTP42858 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC17.49■□□□□ 0.39
HTTP42858 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HTTP42858 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HTTP42858 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HTTP42858 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC17.49■□□□□ 0.39
HTTP42858 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
HTTP42858 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
HTTP42858 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
HTTP42858 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
HTTP42858 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC17.49■□□□□ 0.39
HTTP42858 AC007881.3-201ENST00000608897 607 ntBASIC17.49■□□□□ 0.39
HTTP42858 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
HTTP42858 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.49■□□□□ 0.39
HTTP42858 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HTTP42858 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC17.49■□□□□ 0.39
HTTP42858 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC17.48■□□□□ 0.39
HTTP42858 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC17.48■□□□□ 0.39
HTTP42858 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC17.48■□□□□ 0.39
HTTP42858 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HTTP42858 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HTTP42858 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC17.48■□□□□ 0.39
HTTP42858 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HTTP42858 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC17.48■□□□□ 0.39
HTTP42858 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC17.48■□□□□ 0.39
HTTP42858 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC17.48■□□□□ 0.39
HTTP42858 AC073094.1-201ENST00000453798 433 ntTSL 2 BASIC17.48■□□□□ 0.39
HTTP42858 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC17.48■□□□□ 0.39
HTTP42858 DIO1-215ENST00000610607 796 ntTSL 5 BASIC17.48■□□□□ 0.39
HTTP42858 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
HTTP42858 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC17.48■□□□□ 0.39
HTTP42858 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HTTP42858 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HTTP42858 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HTTP42858 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
HTTP42858 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HTTP42858 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
HTTP42858 DNAJB1P1-201ENST00000429417 1024 ntBASIC17.48■□□□□ 0.39
HTTP42858 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC17.48■□□□□ 0.39
HTTP42858 OARD1-204ENST00000464633 717 ntTSL 2 BASIC17.48■□□□□ 0.39
HTTP42858 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC17.48■□□□□ 0.39
HTTP42858 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC17.48■□□□□ 0.39
HTTP42858 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC17.48■□□□□ 0.39
HTTP42858 AP002490.2-201ENST00000524791 560 ntBASIC17.48■□□□□ 0.39
HTTP42858 AC244157.2-201ENST00000616239 1006 ntBASIC17.48■□□□□ 0.39
HTTP42858 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC17.48■□□□□ 0.39
HTTP42858 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HTTP42858 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HTTP42858 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
HTTP42858 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
HTTP42858 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms