Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
CIITAP33076 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC17.87■□□□□ 0.45
CIITAP33076 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
CIITAP33076 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CIITAP33076 AC007541.1-201ENST00000570282 1469 ntBASIC17.87■□□□□ 0.45
CIITAP33076 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC17.87■□□□□ 0.45
CIITAP33076 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
CIITAP33076 AC022188.1-201ENST00000620960 1664 ntBASIC17.87■□□□□ 0.45
CIITAP33076 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC17.87■□□□□ 0.45
CIITAP33076 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
CIITAP33076 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CIITAP33076 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CIITAP33076 TNRC18P3-201ENST00000441896 2691 ntBASIC17.86■□□□□ 0.45
CIITAP33076 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC17.86■□□□□ 0.45
CIITAP33076 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
CIITAP33076 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
CIITAP33076 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CIITAP33076 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC17.86■□□□□ 0.45
CIITAP33076 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
CIITAP33076 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CIITAP33076 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC17.86■□□□□ 0.45
CIITAP33076 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CIITAP33076 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC17.86■□□□□ 0.45
CIITAP33076 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC17.86■□□□□ 0.45
CIITAP33076 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC17.86■□□□□ 0.45
CIITAP33076 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC17.86■□□□□ 0.45
CIITAP33076 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC17.86■□□□□ 0.45
CIITAP33076 AC055876.2-201ENST00000531834 546 ntBASIC17.86■□□□□ 0.45
CIITAP33076 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC17.86■□□□□ 0.45
CIITAP33076 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC17.86■□□□□ 0.45
CIITAP33076 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC17.86■□□□□ 0.45
CIITAP33076 COQ6-210ENST00000554920 649 ntTSL 3 BASIC17.86■□□□□ 0.45
CIITAP33076 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC17.86■□□□□ 0.45
CIITAP33076 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC17.86■□□□□ 0.45
CIITAP33076 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC17.86■□□□□ 0.45
CIITAP33076 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
CIITAP33076 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC17.86■□□□□ 0.45
CIITAP33076 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CIITAP33076 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CIITAP33076 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC17.86■□□□□ 0.45
CIITAP33076 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC17.86■□□□□ 0.45
CIITAP33076 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC17.86■□□□□ 0.45
CIITAP33076 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CIITAP33076 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC17.86■□□□□ 0.45
CIITAP33076 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CIITAP33076 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CIITAP33076 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CIITAP33076 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CIITAP33076 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC17.86■□□□□ 0.45
CIITAP33076 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CIITAP33076 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC17.85■□□□□ 0.45
CIITAP33076 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CIITAP33076 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CIITAP33076 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
CIITAP33076 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
CIITAP33076 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CIITAP33076 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CIITAP33076 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CIITAP33076 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CIITAP33076 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CIITAP33076 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
CIITAP33076 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.85■□□□□ 0.45
CIITAP33076 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CIITAP33076 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CIITAP33076 OSM-203ENST00000403463 464 ntTSL 3 BASIC17.85■□□□□ 0.45
CIITAP33076 AL035633.1-201ENST00000406139 838 ntBASIC17.85■□□□□ 0.45
CIITAP33076 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
CIITAP33076 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
CIITAP33076 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CIITAP33076 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC17.85■□□□□ 0.45
CIITAP33076 TKT-202ENST00000423516 2075 ntTSL 2 BASIC17.85■□□□□ 0.45
CIITAP33076 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC17.85■□□□□ 0.45
CIITAP33076 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC17.85■□□□□ 0.45
CIITAP33076 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CIITAP33076 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CIITAP33076 LINC02199-201ENST00000506655 2702 ntBASIC17.85■□□□□ 0.45
CIITAP33076 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC17.85■□□□□ 0.45
CIITAP33076 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CIITAP33076 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC17.85■□□□□ 0.45
CIITAP33076 CDK4-206ENST00000549606 558 ntTSL 2 BASIC17.85■□□□□ 0.45
CIITAP33076 COX11-202ENST00000571584 1108 ntTSL 2 BASIC17.85■□□□□ 0.45
CIITAP33076 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
CIITAP33076 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CIITAP33076 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC17.85■□□□□ 0.45
CIITAP33076 LOX-206ENST00000639739 1626 ntTSL 5 BASIC17.85■□□□□ 0.45
CIITAP33076 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CIITAP33076 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CIITAP33076 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
CIITAP33076 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC17.84■□□□□ 0.45
CIITAP33076 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
CIITAP33076 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC17.84■□□□□ 0.45
CIITAP33076 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CIITAP33076 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CIITAP33076 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CIITAP33076 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CIITAP33076 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC17.84■□□□□ 0.45
CIITAP33076 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CIITAP33076 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CIITAP33076 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CIITAP33076 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms