Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGA1P17096 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HMGA1P17096 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGA1P17096 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
HMGA1P17096 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.38■□□□□ 0.21
HMGA1P17096 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HMGA1P17096 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HMGA1P17096 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGA1P17096 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HMGA1P17096 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HMGA1P17096 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC16.38■□□□□ 0.21
HMGA1P17096 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HMGA1P17096 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGA1P17096 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGA1P17096 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
HMGA1P17096 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGA1P17096 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
HMGA1P17096 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC16.38■□□□□ 0.21
HMGA1P17096 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
HMGA1P17096 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC16.38■□□□□ 0.21
HMGA1P17096 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGA1P17096 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
HMGA1P17096 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGA1P17096 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
HMGA1P17096 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC16.38■□□□□ 0.21
HMGA1P17096 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HMGA1P17096 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC16.38■□□□□ 0.21
HMGA1P17096 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC16.38■□□□□ 0.21
HMGA1P17096 AC234783.1-201ENST00000441761 496 ntBASIC16.38■□□□□ 0.21
HMGA1P17096 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC16.38■□□□□ 0.21
HMGA1P17096 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC16.38■□□□□ 0.21
HMGA1P17096 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGA1P17096 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC16.38■□□□□ 0.21
HMGA1P17096 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC16.38■□□□□ 0.21
HMGA1P17096 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC16.38■□□□□ 0.21
HMGA1P17096 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC16.38■□□□□ 0.21
HMGA1P17096 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC16.38■□□□□ 0.21
HMGA1P17096 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC16.38■□□□□ 0.21
HMGA1P17096 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC16.38■□□□□ 0.21
HMGA1P17096 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC16.38■□□□□ 0.21
HMGA1P17096 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC16.38■□□□□ 0.21
HMGA1P17096 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC16.38■□□□□ 0.21
HMGA1P17096 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC16.38■□□□□ 0.21
HMGA1P17096 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC16.38■□□□□ 0.21
HMGA1P17096 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
HMGA1P17096 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC16.38■□□□□ 0.21
HMGA1P17096 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
HMGA1P17096 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
HMGA1P17096 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HMGA1P17096 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC16.38■□□□□ 0.21
HMGA1P17096 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGA1P17096 USE1-206ENST00000595101 1776 ntTSL 2 BASIC16.38■□□□□ 0.21
HMGA1P17096 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
HMGA1P17096 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGA1P17096 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGA1P17096 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGA1P17096 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGA1P17096 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGA1P17096 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC16.38■□□□□ 0.21
HMGA1P17096 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGA1P17096 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
HMGA1P17096 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGA1P17096 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC16.37■□□□□ 0.21
HMGA1P17096 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGA1P17096 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGA1P17096 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGA1P17096 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
HMGA1P17096 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC16.37■□□□□ 0.21
HMGA1P17096 CYP2T1P-202ENST00000641596 2535 ntBASIC16.37■□□□□ 0.21
HMGA1P17096 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
HMGA1P17096 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGA1P17096 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC16.37■□□□□ 0.21
HMGA1P17096 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HMGA1P17096 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC16.37■□□□□ 0.21
HMGA1P17096 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGA1P17096 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC16.37■□□□□ 0.21
HMGA1P17096 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HMGA1P17096 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HMGA1P17096 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC16.37■□□□□ 0.21
HMGA1P17096 RPS2P32-201ENST00000439199 892 ntBASIC16.37■□□□□ 0.21
HMGA1P17096 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC16.37■□□□□ 0.21
HMGA1P17096 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC16.37■□□□□ 0.21
HMGA1P17096 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC16.37■□□□□ 0.21
HMGA1P17096 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
HMGA1P17096 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HMGA1P17096 GAPDHP40-201ENST00000505218 1006 ntBASIC16.37■□□□□ 0.21
HMGA1P17096 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC16.37■□□□□ 0.21
HMGA1P17096 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC16.37■□□□□ 0.21
HMGA1P17096 AP001889.1-201ENST00000525414 633 ntBASIC16.37■□□□□ 0.21
HMGA1P17096 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HMGA1P17096 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC16.37■□□□□ 0.21
HMGA1P17096 Six3os1_5.1-201ENST00000611000 271 ntBASIC16.37■□□□□ 0.21
HMGA1P17096 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
HMGA1P17096 AL603832.2-201ENST00000566195 2125 ntBASIC16.37■□□□□ 0.21
HMGA1P17096 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGA1P17096 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HMGA1P17096 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC16.37■□□□□ 0.21
HMGA1P17096 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC16.37■□□□□ 0.21
HMGA1P17096 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC16.37■□□□□ 0.21
HMGA1P17096 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 116.8 ms