Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 USB1-203ENST00000539737 1212 ntTSL 2 BASIC13.42□□□□□ -0.26
ABCA1O95477 AC123567.1-201ENST00000548294 1261 ntBASIC13.42□□□□□ -0.26
ABCA1O95477 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC13.42□□□□□ -0.26
ABCA1O95477 AL512343.1-201ENST00000605837 169 ntBASIC13.42□□□□□ -0.26
ABCA1O95477 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC13.42□□□□□ -0.26
ABCA1O95477 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC13.42□□□□□ -0.26
ABCA1O95477 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
ABCA1O95477 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
ABCA1O95477 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
ABCA1O95477 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
ABCA1O95477 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC13.42□□□□□ -0.26
ABCA1O95477 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
ABCA1O95477 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
ABCA1O95477 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
ABCA1O95477 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
ABCA1O95477 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
ABCA1O95477 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC13.42□□□□□ -0.26
ABCA1O95477 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
ABCA1O95477 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
ABCA1O95477 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
ABCA1O95477 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
ABCA1O95477 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC13.42□□□□□ -0.26
ABCA1O95477 KRT8P39-201ENST00000396270 1433 ntBASIC13.42□□□□□ -0.26
ABCA1O95477 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC13.42□□□□□ -0.26
ABCA1O95477 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC13.42□□□□□ -0.26
ABCA1O95477 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC13.42□□□□□ -0.26
ABCA1O95477 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC13.42□□□□□ -0.26
ABCA1O95477 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC13.42□□□□□ -0.26
ABCA1O95477 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
ABCA1O95477 PC-204ENST00000524491 1714 ntTSL 2 BASIC13.42□□□□□ -0.26
ABCA1O95477 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
ABCA1O95477 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
ABCA1O95477 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC13.42□□□□□ -0.26
ABCA1O95477 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
ABCA1O95477 BNIP3P42-201ENST00000454982 569 ntBASIC13.42□□□□□ -0.26
ABCA1O95477 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
ABCA1O95477 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC13.42□□□□□ -0.26
ABCA1O95477 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC13.42□□□□□ -0.26
ABCA1O95477 APRT-204ENST00000563655 709 ntTSL 5 BASIC13.42□□□□□ -0.26
ABCA1O95477 BNIP3P29-201ENST00000598302 571 ntBASIC13.42□□□□□ -0.26
ABCA1O95477 AC011447.5-201ENST00000616168 564 ntBASIC13.42□□□□□ -0.26
ABCA1O95477 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
ABCA1O95477 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
ABCA1O95477 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC13.42□□□□□ -0.26
ABCA1O95477 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC13.42□□□□□ -0.26
ABCA1O95477 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
ABCA1O95477 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC13.42□□□□□ -0.26
ABCA1O95477 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
ABCA1O95477 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC13.42□□□□□ -0.26
ABCA1O95477 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
ABCA1O95477 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
ABCA1O95477 TUBB8P12-201ENST00000308911 1335 ntBASIC13.41□□□□□ -0.26
ABCA1O95477 TUBB7P-202ENST00000428444 1305 ntBASIC13.41□□□□□ -0.26
ABCA1O95477 TUBB8P7-204ENST00000567960 1332 ntBASIC13.41□□□□□ -0.26
ABCA1O95477 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
ABCA1O95477 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
ABCA1O95477 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
ABCA1O95477 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC13.41□□□□□ -0.26
ABCA1O95477 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
ABCA1O95477 GALT-202ENST00000450095 1280 ntTSL 2 BASIC13.41□□□□□ -0.26
ABCA1O95477 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
ABCA1O95477 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
ABCA1O95477 AC023310.3-201ENST00000557027 670 ntBASIC13.41□□□□□ -0.26
ABCA1O95477 AC100756.1-201ENST00000562736 682 ntBASIC13.41□□□□□ -0.26
ABCA1O95477 AC138749.3-201ENST00000567691 622 ntBASIC13.41□□□□□ -0.26
ABCA1O95477 MPDU1-223ENST00000582151 728 ntBASIC13.41□□□□□ -0.26
ABCA1O95477 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC13.41□□□□□ -0.26
ABCA1O95477 TMEM261P1-201ENST00000604899 340 ntBASIC13.41□□□□□ -0.26
ABCA1O95477 AC116165.1-201ENST00000611806 668 ntBASIC13.41□□□□□ -0.26
ABCA1O95477 MIR8072-201ENST00000614241 80 ntBASIC13.41□□□□□ -0.26
ABCA1O95477 MIR6775-201ENST00000617557 69 ntBASIC13.41□□□□□ -0.26
ABCA1O95477 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
ABCA1O95477 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
ABCA1O95477 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
ABCA1O95477 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
ABCA1O95477 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
ABCA1O95477 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
ABCA1O95477 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
ABCA1O95477 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
ABCA1O95477 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
ABCA1O95477 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
ABCA1O95477 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC13.41□□□□□ -0.26
ABCA1O95477 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC13.41□□□□□ -0.26
ABCA1O95477 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC13.41□□□□□ -0.26
ABCA1O95477 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
ABCA1O95477 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC13.41□□□□□ -0.26
ABCA1O95477 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC13.41□□□□□ -0.26
ABCA1O95477 PAM16-204ENST00000571941 674 ntTSL 3 BASIC13.41□□□□□ -0.26
ABCA1O95477 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
ABCA1O95477 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
ABCA1O95477 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
ABCA1O95477 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
ABCA1O95477 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
ABCA1O95477 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
ABCA1O95477 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC13.4□□□□□ -0.26
ABCA1O95477 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
ABCA1O95477 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC13.4□□□□□ -0.26
ABCA1O95477 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC13.4□□□□□ -0.26
ABCA1O95477 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
ABCA1O95477 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms