Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 EHF-205ENST00000527935 557 ntTSL 2 BASIC15.01□□□□□ -0.01
LDB3O75112 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC15.01□□□□□ -0.01
LDB3O75112 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC15.01□□□□□ -0.01
LDB3O75112 AL390955.2-201ENST00000603032 514 ntBASIC15.01□□□□□ -0.01
LDB3O75112 AC138649.4-201ENST00000612222 287 ntBASIC15.01□□□□□ -0.01
LDB3O75112 AL390754.1-201ENST00000619088 582 ntBASIC15.01□□□□□ -0.01
LDB3O75112 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC15.01□□□□□ -0.01
LDB3O75112 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LDB3O75112 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
LDB3O75112 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LDB3O75112 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LDB3O75112 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC15.01□□□□□ -0.01
LDB3O75112 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
LDB3O75112 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC15.01□□□□□ -0.01
LDB3O75112 AP005117.1-202ENST00000581724 1908 ntBASIC15.01□□□□□ -0.01
LDB3O75112 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
LDB3O75112 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC15.01□□□□□ -0.01
LDB3O75112 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
LDB3O75112 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
LDB3O75112 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
LDB3O75112 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LDB3O75112 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
LDB3O75112 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC15.01□□□□□ -0.01
LDB3O75112 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LDB3O75112 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
LDB3O75112 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC15.01□□□□□ -0.01
LDB3O75112 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC15□□□□□ -0.01
LDB3O75112 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LDB3O75112 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
LDB3O75112 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
LDB3O75112 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC15□□□□□ -0.01
LDB3O75112 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC15□□□□□ -0.01
LDB3O75112 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LDB3O75112 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC15□□□□□ -0.01
LDB3O75112 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
LDB3O75112 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC15□□□□□ -0.01
LDB3O75112 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC15□□□□□ -0.01
LDB3O75112 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC15□□□□□ -0.01
LDB3O75112 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC15□□□□□ -0.01
LDB3O75112 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC15□□□□□ -0.01
LDB3O75112 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LDB3O75112 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC15□□□□□ -0.01
LDB3O75112 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
LDB3O75112 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC15□□□□□ -0.01
LDB3O75112 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LDB3O75112 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LDB3O75112 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC15□□□□□ -0.01
LDB3O75112 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC15□□□□□ -0.01
LDB3O75112 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
LDB3O75112 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC15□□□□□ -0.01
LDB3O75112 EEF1DP4-201ENST00000446006 880 ntBASIC15□□□□□ -0.01
LDB3O75112 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC15□□□□□ -0.01
LDB3O75112 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC15□□□□□ -0.01
LDB3O75112 AC005498.2-205ENST00000593218 784 ntBASIC15□□□□□ -0.01
LDB3O75112 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC15□□□□□ -0.01
LDB3O75112 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC15□□□□□ -0.01
LDB3O75112 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LDB3O75112 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC15□□□□□ -0.01
LDB3O75112 AC046158.3-201ENST00000624947 2558 ntBASIC15□□□□□ -0.01
LDB3O75112 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC15□□□□□ -0.01
LDB3O75112 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC15□□□□□ -0.01
LDB3O75112 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC15□□□□□ -0.01
LDB3O75112 CASK-202ENST00000378158 3848 ntTSL 5 BASIC15□□□□□ -0.01
LDB3O75112 AL139384.1-201ENST00000612143 3047 ntBASIC15□□□□□ -0.01
LDB3O75112 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LDB3O75112 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LDB3O75112 AC100757.3-201ENST00000622361 1406 ntBASIC15□□□□□ -0.01
LDB3O75112 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LDB3O75112 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC15□□□□□ -0.01
LDB3O75112 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LDB3O75112 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC14.99□□□□□ -0.01
LDB3O75112 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LDB3O75112 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
LDB3O75112 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LDB3O75112 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
LDB3O75112 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
LDB3O75112 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LDB3O75112 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LDB3O75112 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
LDB3O75112 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC14.99□□□□□ -0.01
LDB3O75112 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC14.99□□□□□ -0.01
LDB3O75112 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
LDB3O75112 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
LDB3O75112 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
LDB3O75112 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LDB3O75112 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
LDB3O75112 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
LDB3O75112 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC14.99□□□□□ -0.01
LDB3O75112 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC14.99□□□□□ -0.01
LDB3O75112 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
LDB3O75112 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LDB3O75112 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC14.99□□□□□ -0.01
LDB3O75112 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC14.99□□□□□ -0.01
LDB3O75112 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
LDB3O75112 HNRNPA3P1-201ENST00000401429 1139 ntBASIC14.99□□□□□ -0.01
LDB3O75112 HIST3H2BA-201ENST00000436555 524 ntBASIC14.99□□□□□ -0.01
LDB3O75112 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC14.99□□□□□ -0.01
LDB3O75112 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
LDB3O75112 HNRNPA3P5-201ENST00000455201 833 ntBASIC14.99□□□□□ -0.01
LDB3O75112 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC14.99□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms