Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SHOX2O60902 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC16■□□□□ 0.15
SHOX2O60902 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
SHOX2O60902 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SHOX2O60902 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
SHOX2O60902 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SHOX2O60902 MST1P2-201ENST00000457982 2291 ntBASIC15.99■□□□□ 0.15
SHOX2O60902 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHOX2O60902 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SHOX2O60902 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SHOX2O60902 CNTNAP3P2-201ENST00000617175 3861 ntBASIC15.99■□□□□ 0.15
SHOX2O60902 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHOX2O60902 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC15.99■□□□□ 0.15
SHOX2O60902 AC105206.1-202ENST00000314927 2368 ntBASIC15.99■□□□□ 0.15
SHOX2O60902 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHOX2O60902 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SHOX2O60902 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC15.99■□□□□ 0.15
SHOX2O60902 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC15.99■□□□□ 0.15
SHOX2O60902 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SHOX2O60902 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHOX2O60902 AC246785.2-201ENST00000432512 513 ntBASIC15.99■□□□□ 0.15
SHOX2O60902 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SHOX2O60902 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC15.99■□□□□ 0.15
SHOX2O60902 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC15.99■□□□□ 0.15
SHOX2O60902 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHOX2O60902 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SHOX2O60902 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SHOX2O60902 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC15.99■□□□□ 0.15
SHOX2O60902 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHOX2O60902 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHOX2O60902 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHOX2O60902 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHOX2O60902 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHOX2O60902 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC15.99■□□□□ 0.15
SHOX2O60902 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHOX2O60902 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHOX2O60902 SLC6A6P1-201ENST00000413933 1850 ntBASIC15.99■□□□□ 0.15
SHOX2O60902 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
SHOX2O60902 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SHOX2O60902 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHOX2O60902 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
SHOX2O60902 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC15.99■□□□□ 0.15
SHOX2O60902 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHOX2O60902 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
SHOX2O60902 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHOX2O60902 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SHOX2O60902 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC15.98■□□□□ 0.15
SHOX2O60902 AC134407.2-201ENST00000625089 1978 ntBASIC15.98■□□□□ 0.15
SHOX2O60902 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
SHOX2O60902 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHOX2O60902 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHOX2O60902 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHOX2O60902 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHOX2O60902 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC15.98■□□□□ 0.15
SHOX2O60902 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHOX2O60902 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
SHOX2O60902 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHOX2O60902 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHOX2O60902 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
SHOX2O60902 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHOX2O60902 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC15.98■□□□□ 0.15
SHOX2O60902 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC15.98■□□□□ 0.15
SHOX2O60902 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHOX2O60902 AL645939.2-201ENST00000427340 991 ntBASIC15.98■□□□□ 0.15
SHOX2O60902 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC15.98■□□□□ 0.15
SHOX2O60902 AL671277.2-201ENST00000458060 996 ntBASIC15.98■□□□□ 0.15
SHOX2O60902 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC15.98■□□□□ 0.15
SHOX2O60902 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC15.98■□□□□ 0.15
SHOX2O60902 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC15.98■□□□□ 0.15
SHOX2O60902 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
SHOX2O60902 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC15.98■□□□□ 0.15
SHOX2O60902 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC15.98■□□□□ 0.15
SHOX2O60902 NDUFV2-AS1-203ENST00000608008 779 ntBASIC15.98■□□□□ 0.15
SHOX2O60902 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
SHOX2O60902 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHOX2O60902 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHOX2O60902 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHOX2O60902 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
SHOX2O60902 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHOX2O60902 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHOX2O60902 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
SHOX2O60902 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC15.98■□□□□ 0.15
SHOX2O60902 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
SHOX2O60902 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHOX2O60902 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHOX2O60902 INTS4P1-201ENST00000438455 1935 ntBASIC15.98■□□□□ 0.15
SHOX2O60902 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHOX2O60902 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
SHOX2O60902 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
SHOX2O60902 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
SHOX2O60902 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SHOX2O60902 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
SHOX2O60902 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SHOX2O60902 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC15.97■□□□□ 0.15
SHOX2O60902 FES-203ENST00000394302 2133 ntTSL 5 BASIC15.97■□□□□ 0.15
SHOX2O60902 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
SHOX2O60902 LINC02346-201ENST00000383019 1967 ntTSL 2 BASIC15.97■□□□□ 0.15
SHOX2O60902 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
SHOX2O60902 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
SHOX2O60902 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 76.4 ms