Protein–RNA interactions for Protein: Q9H611

PIF1, ATP-dependent DNA helicase PIF1, humanhuman

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PIF1Q9H611 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PIF1Q9H611 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PIF1Q9H611 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC15.34■□□□□ 0.05
PIF1Q9H611 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PIF1Q9H611 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
PIF1Q9H611 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC15.34■□□□□ 0.05
PIF1Q9H611 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
PIF1Q9H611 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PIF1Q9H611 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
PIF1Q9H611 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PIF1Q9H611 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PIF1Q9H611 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PIF1Q9H611 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC15.34■□□□□ 0.05
PIF1Q9H611 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
PIF1Q9H611 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC15.34■□□□□ 0.05
PIF1Q9H611 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PIF1Q9H611 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC15.34■□□□□ 0.05
PIF1Q9H611 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC15.34■□□□□ 0.05
PIF1Q9H611 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
PIF1Q9H611 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC15.34■□□□□ 0.05
PIF1Q9H611 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC15.34■□□□□ 0.05
PIF1Q9H611 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC15.34■□□□□ 0.05
PIF1Q9H611 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PIF1Q9H611 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PIF1Q9H611 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
PIF1Q9H611 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC15.34■□□□□ 0.05
PIF1Q9H611 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PIF1Q9H611 MIR1199-201ENST00000621445 119 ntBASIC15.34■□□□□ 0.05
PIF1Q9H611 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC15.34■□□□□ 0.05
PIF1Q9H611 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PIF1Q9H611 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PIF1Q9H611 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PIF1Q9H611 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PIF1Q9H611 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC15.34■□□□□ 0.05
PIF1Q9H611 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC15.34■□□□□ 0.05
PIF1Q9H611 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC15.34■□□□□ 0.05
PIF1Q9H611 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC15.34■□□□□ 0.05
PIF1Q9H611 TMBIM7P-203ENST00000641617 1718 ntBASIC15.34■□□□□ 0.05
PIF1Q9H611 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC15.34■□□□□ 0.05
PIF1Q9H611 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PIF1Q9H611 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC15.34■□□□□ 0.05
PIF1Q9H611 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC15.34■□□□□ 0.05
PIF1Q9H611 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC15.34■□□□□ 0.05
PIF1Q9H611 AC091951.1-201ENST00000512854 2465 ntBASIC15.34■□□□□ 0.05
PIF1Q9H611 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
PIF1Q9H611 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC15.34■□□□□ 0.05
PIF1Q9H611 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PIF1Q9H611 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PIF1Q9H611 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
PIF1Q9H611 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
PIF1Q9H611 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
PIF1Q9H611 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
PIF1Q9H611 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC15.33■□□□□ 0.05
PIF1Q9H611 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
PIF1Q9H611 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
PIF1Q9H611 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC15.33■□□□□ 0.05
PIF1Q9H611 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.05
PIF1Q9H611 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
PIF1Q9H611 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PIF1Q9H611 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC15.33■□□□□ 0.04
PIF1Q9H611 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC15.33■□□□□ 0.04
PIF1Q9H611 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
PIF1Q9H611 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PIF1Q9H611 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
PIF1Q9H611 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PIF1Q9H611 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC15.33■□□□□ 0.04
PIF1Q9H611 HAUS4P1-201ENST00000406739 1145 ntBASIC15.33■□□□□ 0.04
PIF1Q9H611 HMGA1P7-201ENST00000406908 502 ntBASIC15.33■□□□□ 0.04
PIF1Q9H611 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
PIF1Q9H611 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC15.33■□□□□ 0.04
PIF1Q9H611 AC079781.3-201ENST00000449110 356 ntBASIC15.33■□□□□ 0.04
PIF1Q9H611 IGHV3-65-201ENST00000523210 341 ntBASIC15.33■□□□□ 0.04
PIF1Q9H611 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC15.33■□□□□ 0.04
PIF1Q9H611 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC15.33■□□□□ 0.04
PIF1Q9H611 ETFA-208ENST00000559602 792 ntTSL 3 BASIC15.33■□□□□ 0.04
PIF1Q9H611 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
PIF1Q9H611 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PIF1Q9H611 OR7E47P-204ENST00000575924 449 ntBASIC15.33■□□□□ 0.04
PIF1Q9H611 MIR4515-201ENST00000584082 81 ntBASIC15.33■□□□□ 0.04
PIF1Q9H611 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC15.33■□□□□ 0.04
PIF1Q9H611 ACTL9-202ENST00000612068 1252 ntBASIC15.33■□□□□ 0.04
PIF1Q9H611 AL773604.1-201ENST00000617417 272 ntBASIC15.33■□□□□ 0.04
PIF1Q9H611 AC008735.5-201ENST00000623544 497 ntBASIC15.33■□□□□ 0.04
PIF1Q9H611 TP73-AS1-207ENST00000624167 988 ntBASIC15.33■□□□□ 0.04
PIF1Q9H611 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PIF1Q9H611 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC15.33■□□□□ 0.04
PIF1Q9H611 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PIF1Q9H611 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC15.33■□□□□ 0.04
PIF1Q9H611 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PIF1Q9H611 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
PIF1Q9H611 AL009178.2-201ENST00000597278 2719 ntBASIC15.33■□□□□ 0.04
PIF1Q9H611 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PIF1Q9H611 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PIF1Q9H611 AP002414.3-201ENST00000589352 1468 ntBASIC15.33■□□□□ 0.04
PIF1Q9H611 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC15.33■□□□□ 0.04
PIF1Q9H611 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PIF1Q9H611 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC15.33■□□□□ 0.04
PIF1Q9H611 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PIF1Q9H611 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PIF1Q9H611 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms