Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC16.9■□□□□ 0.3
PAAF1Q9BRP4 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PAAF1Q9BRP4 AC124283.3-201ENST00000570869 594 ntBASIC16.9■□□□□ 0.3
PAAF1Q9BRP4 MIR4313-201ENST00000580760 101 ntBASIC16.9■□□□□ 0.3
PAAF1Q9BRP4 CU634019.7-201ENST00000624153 1185 ntBASIC16.9■□□□□ 0.3
PAAF1Q9BRP4 FP236241.2-201ENST00000624906 1185 ntBASIC16.9■□□□□ 0.3
PAAF1Q9BRP4 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
PAAF1Q9BRP4 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PAAF1Q9BRP4 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PAAF1Q9BRP4 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PAAF1Q9BRP4 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PAAF1Q9BRP4 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC16.9■□□□□ 0.3
PAAF1Q9BRP4 AL121723.1-201ENST00000445194 1519 ntBASIC16.9■□□□□ 0.3
PAAF1Q9BRP4 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PAAF1Q9BRP4 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PAAF1Q9BRP4 AC069224.1-201ENST00000566372 1715 ntBASIC16.9■□□□□ 0.3
PAAF1Q9BRP4 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC16.9■□□□□ 0.3
PAAF1Q9BRP4 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC16.9■□□□□ 0.3
PAAF1Q9BRP4 HNRNPA1P48-201ENST00000562726 1377 ntBASIC16.89■□□□□ 0.3
PAAF1Q9BRP4 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC16.89■□□□□ 0.3
PAAF1Q9BRP4 AC124067.4-201ENST00000519691 2379 ntBASIC16.89■□□□□ 0.3
PAAF1Q9BRP4 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
PAAF1Q9BRP4 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
PAAF1Q9BRP4 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PAAF1Q9BRP4 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
PAAF1Q9BRP4 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
PAAF1Q9BRP4 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC16.89■□□□□ 0.29
PAAF1Q9BRP4 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PAAF1Q9BRP4 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC16.89■□□□□ 0.29
PAAF1Q9BRP4 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC16.89■□□□□ 0.29
PAAF1Q9BRP4 TP73-209ENST00000603362 1668 ntTSL 5 BASIC16.89■□□□□ 0.29
PAAF1Q9BRP4 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
PAAF1Q9BRP4 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PAAF1Q9BRP4 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PAAF1Q9BRP4 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PAAF1Q9BRP4 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PAAF1Q9BRP4 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
PAAF1Q9BRP4 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC16.89■□□□□ 0.29
PAAF1Q9BRP4 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PAAF1Q9BRP4 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
PAAF1Q9BRP4 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PAAF1Q9BRP4 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
PAAF1Q9BRP4 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC16.89■□□□□ 0.29
PAAF1Q9BRP4 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC16.89■□□□□ 0.29
PAAF1Q9BRP4 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC16.89■□□□□ 0.29
PAAF1Q9BRP4 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC16.89■□□□□ 0.29
PAAF1Q9BRP4 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC16.89■□□□□ 0.29
PAAF1Q9BRP4 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC16.89■□□□□ 0.29
PAAF1Q9BRP4 ORC6-206ENST00000568364 888 ntTSL 5 BASIC16.89■□□□□ 0.29
PAAF1Q9BRP4 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
PAAF1Q9BRP4 GPX4-206ENST00000588919 803 ntTSL 2 BASIC16.89■□□□□ 0.29
PAAF1Q9BRP4 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC16.89■□□□□ 0.29
PAAF1Q9BRP4 AL049840.4-201ENST00000602422 811 ntBASIC16.89■□□□□ 0.29
PAAF1Q9BRP4 MIR6752-201ENST00000618442 71 ntBASIC16.89■□□□□ 0.29
PAAF1Q9BRP4 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
PAAF1Q9BRP4 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC16.89■□□□□ 0.29
PAAF1Q9BRP4 WAC-202ENST00000347934 2839 ntTSL 5 BASIC16.89■□□□□ 0.29
PAAF1Q9BRP4 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
PAAF1Q9BRP4 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PAAF1Q9BRP4 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PAAF1Q9BRP4 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC16.89■□□□□ 0.29
PAAF1Q9BRP4 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
PAAF1Q9BRP4 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC16.89■□□□□ 0.29
PAAF1Q9BRP4 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC16.89■□□□□ 0.29
PAAF1Q9BRP4 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PAAF1Q9BRP4 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
PAAF1Q9BRP4 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
PAAF1Q9BRP4 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
PAAF1Q9BRP4 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
PAAF1Q9BRP4 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PAAF1Q9BRP4 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC16.88■□□□□ 0.29
PAAF1Q9BRP4 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC16.88■□□□□ 0.29
PAAF1Q9BRP4 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PAAF1Q9BRP4 INTS4P2-202ENST00000614726 2019 ntBASIC16.88■□□□□ 0.29
PAAF1Q9BRP4 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
PAAF1Q9BRP4 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
PAAF1Q9BRP4 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PAAF1Q9BRP4 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
PAAF1Q9BRP4 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
PAAF1Q9BRP4 ANKRD19P-201ENST00000338192 862 ntBASIC16.88■□□□□ 0.29
PAAF1Q9BRP4 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
PAAF1Q9BRP4 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
PAAF1Q9BRP4 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC16.88■□□□□ 0.29
PAAF1Q9BRP4 HIST1H2BPS3-201ENST00000419683 341 ntBASIC16.88■□□□□ 0.29
PAAF1Q9BRP4 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC16.88■□□□□ 0.29
PAAF1Q9BRP4 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PAAF1Q9BRP4 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC16.88■□□□□ 0.29
PAAF1Q9BRP4 VDAC1P7-201ENST00000462417 847 ntBASIC16.88■□□□□ 0.29
PAAF1Q9BRP4 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC16.88■□□□□ 0.29
PAAF1Q9BRP4 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC16.88■□□□□ 0.29
PAAF1Q9BRP4 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC16.88■□□□□ 0.29
PAAF1Q9BRP4 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC16.88■□□□□ 0.29
PAAF1Q9BRP4 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC16.88■□□□□ 0.29
PAAF1Q9BRP4 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC16.88■□□□□ 0.29
PAAF1Q9BRP4 WNT11-204ENST00000621122 789 ntTSL 5 BASIC16.88■□□□□ 0.29
PAAF1Q9BRP4 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
PAAF1Q9BRP4 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
PAAF1Q9BRP4 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PAAF1Q9BRP4 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
PAAF1Q9BRP4 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms