Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NUP88Q99567 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
NUP88Q99567 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
NUP88Q99567 AC026691.1-201ENST00000602502 2017 ntBASIC18.68■□□□□ 0.58
NUP88Q99567 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC18.68■□□□□ 0.58
NUP88Q99567 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NUP88Q99567 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NUP88Q99567 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
NUP88Q99567 DFFBP1-201ENST00000433250 979 ntBASIC18.68■□□□□ 0.58
NUP88Q99567 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC18.68■□□□□ 0.58
NUP88Q99567 PUDP-206ENST00000540122 825 ntTSL 2 BASIC18.68■□□□□ 0.58
NUP88Q99567 5S_rRNA.22-201ENST00000614916 106 ntBASIC18.68■□□□□ 0.58
NUP88Q99567 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
NUP88Q99567 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
NUP88Q99567 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC18.68■□□□□ 0.58
NUP88Q99567 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC18.68■□□□□ 0.58
NUP88Q99567 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
NUP88Q99567 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
NUP88Q99567 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
NUP88Q99567 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NUP88Q99567 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
NUP88Q99567 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC18.68■□□□□ 0.58
NUP88Q99567 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC18.68■□□□□ 0.58
NUP88Q99567 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC18.68■□□□□ 0.58
NUP88Q99567 AGK-211ENST00000629555 2765 ntTSL 5 BASIC18.68■□□□□ 0.58
NUP88Q99567 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC18.68■□□□□ 0.58
NUP88Q99567 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC18.68■□□□□ 0.58
NUP88Q99567 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NUP88Q99567 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC18.68■□□□□ 0.58
NUP88Q99567 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC18.67■□□□□ 0.58
NUP88Q99567 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NUP88Q99567 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
NUP88Q99567 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC18.67■□□□□ 0.58
NUP88Q99567 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC18.67■□□□□ 0.58
NUP88Q99567 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC18.67■□□□□ 0.58
NUP88Q99567 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
NUP88Q99567 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
NUP88Q99567 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
NUP88Q99567 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC18.67■□□□□ 0.58
NUP88Q99567 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NUP88Q99567 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
NUP88Q99567 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
NUP88Q99567 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC18.67■□□□□ 0.58
NUP88Q99567 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NUP88Q99567 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC18.67■□□□□ 0.58
NUP88Q99567 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC18.67■□□□□ 0.58
NUP88Q99567 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
NUP88Q99567 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC18.67■□□□□ 0.58
NUP88Q99567 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC18.67■□□□□ 0.58
NUP88Q99567 AL358472.5-202ENST00000641448 1267 ntBASIC18.67■□□□□ 0.58
NUP88Q99567 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NUP88Q99567 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC18.67■□□□□ 0.58
NUP88Q99567 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NUP88Q99567 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC18.67■□□□□ 0.58
NUP88Q99567 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NUP88Q99567 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
NUP88Q99567 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NUP88Q99567 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC18.67■□□□□ 0.58
NUP88Q99567 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NUP88Q99567 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC18.67■□□□□ 0.58
NUP88Q99567 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
NUP88Q99567 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC18.67■□□□□ 0.58
NUP88Q99567 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
NUP88Q99567 AL391005.1-201ENST00000623953 2435 ntBASIC18.66■□□□□ 0.58
NUP88Q99567 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
NUP88Q99567 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC18.66■□□□□ 0.58
NUP88Q99567 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
NUP88Q99567 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
NUP88Q99567 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC18.66■□□□□ 0.58
NUP88Q99567 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
NUP88Q99567 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC18.66■□□□□ 0.58
NUP88Q99567 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
NUP88Q99567 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
NUP88Q99567 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC18.66■□□□□ 0.58
NUP88Q99567 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
NUP88Q99567 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
NUP88Q99567 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
NUP88Q99567 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
NUP88Q99567 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
NUP88Q99567 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
NUP88Q99567 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
NUP88Q99567 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
NUP88Q99567 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
NUP88Q99567 AZGP1P1-201ENST00000411909 902 ntBASIC18.66■□□□□ 0.58
NUP88Q99567 PTPA-220ENST00000436883 532 ntTSL 4 BASIC18.66■□□□□ 0.58
NUP88Q99567 FTH1-202ENST00000526640 786 ntTSL 2 BASIC18.66■□□□□ 0.58
NUP88Q99567 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC18.66■□□□□ 0.58
NUP88Q99567 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC18.66■□□□□ 0.58
NUP88Q99567 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC18.66■□□□□ 0.58
NUP88Q99567 AC007431.3-201ENST00000623221 587 ntBASIC18.66■□□□□ 0.58
NUP88Q99567 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC18.66■□□□□ 0.58
NUP88Q99567 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
NUP88Q99567 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
NUP88Q99567 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC18.66■□□□□ 0.58
NUP88Q99567 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
NUP88Q99567 GCK-209ENST00000616242 2260 ntTSL 5 BASIC18.66■□□□□ 0.58
NUP88Q99567 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC18.66■□□□□ 0.58
NUP88Q99567 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
NUP88Q99567 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
NUP88Q99567 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms