Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 FHL2-212ENST00000607522 759 ntTSL 2 BASIC19.09■□□□□ 0.65
CHMP4CQ96CF2 SPDYE12P-201ENST00000618416 771 ntBASIC19.09■□□□□ 0.65
CHMP4CQ96CF2 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CHMP4CQ96CF2 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
CHMP4CQ96CF2 AC103702.1-201ENST00000548801 2630 ntBASIC19.09■□□□□ 0.65
CHMP4CQ96CF2 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC19.09■□□□□ 0.65
CHMP4CQ96CF2 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC19.09■□□□□ 0.65
CHMP4CQ96CF2 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CHMP4CQ96CF2 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
CHMP4CQ96CF2 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CHMP4CQ96CF2 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CHMP4CQ96CF2 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
CHMP4CQ96CF2 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC19.08■□□□□ 0.65
CHMP4CQ96CF2 AC007950.2-201ENST00000615045 2347 ntBASIC19.08■□□□□ 0.65
CHMP4CQ96CF2 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC19.08■□□□□ 0.65
CHMP4CQ96CF2 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
CHMP4CQ96CF2 ACE-203ENST00000413513 2237 ntTSL 2 BASIC19.08■□□□□ 0.65
CHMP4CQ96CF2 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
CHMP4CQ96CF2 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC19.08■□□□□ 0.65
CHMP4CQ96CF2 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC19.08■□□□□ 0.65
CHMP4CQ96CF2 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC19.08■□□□□ 0.65
CHMP4CQ96CF2 ING5-213ENST00000636051 4199 ntTSL 5 BASIC19.08■□□□□ 0.65
CHMP4CQ96CF2 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
CHMP4CQ96CF2 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC19.08■□□□□ 0.65
CHMP4CQ96CF2 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CHMP4CQ96CF2 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
CHMP4CQ96CF2 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC19.08■□□□□ 0.64
CHMP4CQ96CF2 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC19.08■□□□□ 0.64
CHMP4CQ96CF2 HNRNPA1P40-201ENST00000426371 1278 ntBASIC19.08■□□□□ 0.64
CHMP4CQ96CF2 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC19.08■□□□□ 0.64
CHMP4CQ96CF2 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CHMP4CQ96CF2 NAA60-208ENST00000570819 833 ntTSL 2 BASIC19.08■□□□□ 0.64
CHMP4CQ96CF2 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC19.08■□□□□ 0.64
CHMP4CQ96CF2 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CHMP4CQ96CF2 AC015911.4-201ENST00000588022 1070 ntBASIC19.08■□□□□ 0.64
CHMP4CQ96CF2 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CHMP4CQ96CF2 AL096865.1-201ENST00000606796 927 ntBASIC19.08■□□□□ 0.64
CHMP4CQ96CF2 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC19.08■□□□□ 0.64
CHMP4CQ96CF2 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC19.08■□□□□ 0.64
CHMP4CQ96CF2 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC19.08■□□□□ 0.64
CHMP4CQ96CF2 AL589702.1-201ENST00000641229 1509 ntBASIC19.08■□□□□ 0.64
CHMP4CQ96CF2 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CHMP4CQ96CF2 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
CHMP4CQ96CF2 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
CHMP4CQ96CF2 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CHMP4CQ96CF2 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CHMP4CQ96CF2 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC19.07■□□□□ 0.64
CHMP4CQ96CF2 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CHMP4CQ96CF2 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
CHMP4CQ96CF2 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CHMP4CQ96CF2 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC19.07■□□□□ 0.64
CHMP4CQ96CF2 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC19.07■□□□□ 0.64
CHMP4CQ96CF2 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
CHMP4CQ96CF2 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC19.07■□□□□ 0.64
CHMP4CQ96CF2 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CHMP4CQ96CF2 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CHMP4CQ96CF2 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
CHMP4CQ96CF2 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CHMP4CQ96CF2 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CHMP4CQ96CF2 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC19.07■□□□□ 0.64
CHMP4CQ96CF2 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CHMP4CQ96CF2 AC098859.1-201ENST00000502915 1238 ntBASIC19.07■□□□□ 0.64
CHMP4CQ96CF2 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CHMP4CQ96CF2 MIR4745-201ENST00000577608 62 ntBASIC19.07■□□□□ 0.64
CHMP4CQ96CF2 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC19.07■□□□□ 0.64
CHMP4CQ96CF2 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC19.07■□□□□ 0.64
CHMP4CQ96CF2 MIR4321-201ENST00000592276 80 ntBASIC19.07■□□□□ 0.64
CHMP4CQ96CF2 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CHMP4CQ96CF2 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC19.07■□□□□ 0.64
CHMP4CQ96CF2 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
CHMP4CQ96CF2 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC19.07■□□□□ 0.64
CHMP4CQ96CF2 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CHMP4CQ96CF2 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC19.07■□□□□ 0.64
CHMP4CQ96CF2 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC19.07■□□□□ 0.64
CHMP4CQ96CF2 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CHMP4CQ96CF2 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CHMP4CQ96CF2 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC19.07■□□□□ 0.64
CHMP4CQ96CF2 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
CHMP4CQ96CF2 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CHMP4CQ96CF2 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CHMP4CQ96CF2 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC19.06■□□□□ 0.64
CHMP4CQ96CF2 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC19.06■□□□□ 0.64
CHMP4CQ96CF2 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
CHMP4CQ96CF2 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CHMP4CQ96CF2 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHMP4CQ96CF2 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHMP4CQ96CF2 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CHMP4CQ96CF2 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHMP4CQ96CF2 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHMP4CQ96CF2 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC19.06■□□□□ 0.64
CHMP4CQ96CF2 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHMP4CQ96CF2 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHMP4CQ96CF2 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC19.06■□□□□ 0.64
CHMP4CQ96CF2 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC19.06■□□□□ 0.64
CHMP4CQ96CF2 MIR661-201ENST00000384842 89 ntBASIC19.06■□□□□ 0.64
CHMP4CQ96CF2 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC19.06■□□□□ 0.64
CHMP4CQ96CF2 BASP1P1-201ENST00000430708 665 ntBASIC19.06■□□□□ 0.64
CHMP4CQ96CF2 SATB1-217ENST00000493952 626 ntTSL 3 BASIC19.06■□□□□ 0.64
CHMP4CQ96CF2 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC19.06■□□□□ 0.64
CHMP4CQ96CF2 BANF1P1-201ENST00000553684 263 ntBASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms