Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SYNE4Q8N205 APOC3-202ENST00000375345 604 ntTSL 5 BASIC19.68■□□□□ 0.74
SYNE4Q8N205 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC19.68■□□□□ 0.74
SYNE4Q8N205 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC19.68■□□□□ 0.74
SYNE4Q8N205 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC19.68■□□□□ 0.74
SYNE4Q8N205 AC108725.1-201ENST00000495472 409 ntBASIC19.68■□□□□ 0.74
SYNE4Q8N205 AC106760.1-201ENST00000508690 800 ntBASIC19.68■□□□□ 0.74
SYNE4Q8N205 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC19.68■□□□□ 0.74
SYNE4Q8N205 AC068587.3-201ENST00000526613 355 ntBASIC19.68■□□□□ 0.74
SYNE4Q8N205 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC19.68■□□□□ 0.74
SYNE4Q8N205 MIR4313-201ENST00000580760 101 ntBASIC19.68■□□□□ 0.74
SYNE4Q8N205 AC103810.3-201ENST00000583567 96 ntBASIC19.68■□□□□ 0.74
SYNE4Q8N205 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC19.68■□□□□ 0.74
SYNE4Q8N205 AC244669.2-201ENST00000612320 853 ntBASIC19.68■□□□□ 0.74
SYNE4Q8N205 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SYNE4Q8N205 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
SYNE4Q8N205 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SYNE4Q8N205 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SYNE4Q8N205 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SYNE4Q8N205 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SYNE4Q8N205 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
SYNE4Q8N205 AL596087.1-201ENST00000400979 1969 ntBASIC19.68■□□□□ 0.74
SYNE4Q8N205 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SYNE4Q8N205 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SYNE4Q8N205 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SYNE4Q8N205 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
SYNE4Q8N205 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
SYNE4Q8N205 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
SYNE4Q8N205 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SYNE4Q8N205 SP100-205ENST00000409824 1802 ntTSL 5 BASIC19.67■□□□□ 0.74
SYNE4Q8N205 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
SYNE4Q8N205 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC19.67■□□□□ 0.74
SYNE4Q8N205 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
SYNE4Q8N205 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC19.67■□□□□ 0.74
SYNE4Q8N205 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
SYNE4Q8N205 SOCS2P1-201ENST00000417727 557 ntBASIC19.67■□□□□ 0.74
SYNE4Q8N205 FO681548.1-201ENST00000455617 1132 ntBASIC19.67■□□□□ 0.74
SYNE4Q8N205 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SYNE4Q8N205 ENPP7P5-201ENST00000541031 1031 ntBASIC19.67■□□□□ 0.74
SYNE4Q8N205 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC19.67■□□□□ 0.74
SYNE4Q8N205 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC19.67■□□□□ 0.74
SYNE4Q8N205 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC19.67■□□□□ 0.74
SYNE4Q8N205 AC000095.1-201ENST00000603208 874 ntBASIC19.67■□□□□ 0.74
SYNE4Q8N205 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC19.67■□□□□ 0.74
SYNE4Q8N205 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
SYNE4Q8N205 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC19.67■□□□□ 0.74
SYNE4Q8N205 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SYNE4Q8N205 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SYNE4Q8N205 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SYNE4Q8N205 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SYNE4Q8N205 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC19.67■□□□□ 0.74
SYNE4Q8N205 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SYNE4Q8N205 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SYNE4Q8N205 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SYNE4Q8N205 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SYNE4Q8N205 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC19.66■□□□□ 0.74
SYNE4Q8N205 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
SYNE4Q8N205 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SYNE4Q8N205 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SYNE4Q8N205 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC19.66■□□□□ 0.74
SYNE4Q8N205 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SYNE4Q8N205 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
SYNE4Q8N205 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SYNE4Q8N205 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SYNE4Q8N205 FAM21FP-201ENST00000426241 1131 ntBASIC19.66■□□□□ 0.74
SYNE4Q8N205 RPL7P3-201ENST00000441388 714 ntBASIC19.66■□□□□ 0.74
SYNE4Q8N205 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC19.66■□□□□ 0.74
SYNE4Q8N205 FTH1P14-201ENST00000482930 551 ntBASIC19.66■□□□□ 0.74
SYNE4Q8N205 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SYNE4Q8N205 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC19.66■□□□□ 0.74
SYNE4Q8N205 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SYNE4Q8N205 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SYNE4Q8N205 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC19.66■□□□□ 0.74
SYNE4Q8N205 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
SYNE4Q8N205 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SYNE4Q8N205 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC19.66■□□□□ 0.74
SYNE4Q8N205 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SYNE4Q8N205 DRD5P1-201ENST00000456605 1438 ntBASIC19.66■□□□□ 0.74
SYNE4Q8N205 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC19.66■□□□□ 0.74
SYNE4Q8N205 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC19.66■□□□□ 0.74
SYNE4Q8N205 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SYNE4Q8N205 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SYNE4Q8N205 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC19.66■□□□□ 0.74
SYNE4Q8N205 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SYNE4Q8N205 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC19.65■□□□□ 0.74
SYNE4Q8N205 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
SYNE4Q8N205 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
SYNE4Q8N205 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC19.65■□□□□ 0.74
SYNE4Q8N205 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SYNE4Q8N205 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
SYNE4Q8N205 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
SYNE4Q8N205 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
SYNE4Q8N205 AC005229.1-201ENST00000392885 409 ntBASIC19.65■□□□□ 0.74
SYNE4Q8N205 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC19.65■□□□□ 0.74
SYNE4Q8N205 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
SYNE4Q8N205 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC19.65■□□□□ 0.74
SYNE4Q8N205 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC19.65■□□□□ 0.74
SYNE4Q8N205 TPI1-206ENST00000488464 791 ntTSL 5 BASIC19.65■□□□□ 0.74
SYNE4Q8N205 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC19.65■□□□□ 0.74
SYNE4Q8N205 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms