Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC006001.1-201ENST00000325130 474 ntBASIC19.21■□□□□ 0.67
CCDC88AQ3V6T2 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC88AQ3V6T2 IGF1-203ENST00000392904 761 ntTSL 5 BASIC19.21■□□□□ 0.67
CCDC88AQ3V6T2 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC19.21■□□□□ 0.67
CCDC88AQ3V6T2 AC044849.1-201ENST00000519737 1188 ntBASIC19.21■□□□□ 0.67
CCDC88AQ3V6T2 AP001582.1-201ENST00000525856 295 ntBASIC19.21■□□□□ 0.67
CCDC88AQ3V6T2 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC19.21■□□□□ 0.67
CCDC88AQ3V6T2 KLK3-207ENST00000595952 969 ntTSL 3 BASIC19.21■□□□□ 0.67
CCDC88AQ3V6T2 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC19.21■□□□□ 0.67
CCDC88AQ3V6T2 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC88AQ3V6T2 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC19.21■□□□□ 0.67
CCDC88AQ3V6T2 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC19.21■□□□□ 0.67
CCDC88AQ3V6T2 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC19.21■□□□□ 0.67
CCDC88AQ3V6T2 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC19.21■□□□□ 0.67
CCDC88AQ3V6T2 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC88AQ3V6T2 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC88AQ3V6T2 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC19.21■□□□□ 0.66
CCDC88AQ3V6T2 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC88AQ3V6T2 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC19.2■□□□□ 0.66
CCDC88AQ3V6T2 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC88AQ3V6T2 BX284668.4-201ENST00000453917 508 ntBASIC19.2■□□□□ 0.66
CCDC88AQ3V6T2 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
CCDC88AQ3V6T2 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC88AQ3V6T2 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC19.2■□□□□ 0.66
CCDC88AQ3V6T2 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC88AQ3V6T2 AC145423.3-201ENST00000615987 467 ntBASIC19.2■□□□□ 0.66
CCDC88AQ3V6T2 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC88AQ3V6T2 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC88AQ3V6T2 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC88AQ3V6T2 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC88AQ3V6T2 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC19.2■□□□□ 0.66
CCDC88AQ3V6T2 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC19.2■□□□□ 0.66
CCDC88AQ3V6T2 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC19.2■□□□□ 0.66
CCDC88AQ3V6T2 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC88AQ3V6T2 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
CCDC88AQ3V6T2 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC19.2■□□□□ 0.66
CCDC88AQ3V6T2 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC88AQ3V6T2 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC88AQ3V6T2 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC88AQ3V6T2 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
CCDC88AQ3V6T2 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC88AQ3V6T2 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC88AQ3V6T2 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC19.2■□□□□ 0.66
CCDC88AQ3V6T2 RPL17P11-201ENST00000417593 544 ntBASIC19.2■□□□□ 0.66
CCDC88AQ3V6T2 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
CCDC88AQ3V6T2 KRT18P43-201ENST00000469825 1281 ntBASIC19.2■□□□□ 0.66
CCDC88AQ3V6T2 FTLP10-202ENST00000505798 471 ntBASIC19.2■□□□□ 0.66
CCDC88AQ3V6T2 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC19.2■□□□□ 0.66
CCDC88AQ3V6T2 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC19.2■□□□□ 0.66
CCDC88AQ3V6T2 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC19.2■□□□□ 0.66
CCDC88AQ3V6T2 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC19.2■□□□□ 0.66
CCDC88AQ3V6T2 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC88AQ3V6T2 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC88AQ3V6T2 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC88AQ3V6T2 PRORSD1P-202ENST00000563365 2154 ntBASIC19.19■□□□□ 0.66
CCDC88AQ3V6T2 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
CCDC88AQ3V6T2 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC19.19■□□□□ 0.66
CCDC88AQ3V6T2 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC88AQ3V6T2 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC88AQ3V6T2 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC19.19■□□□□ 0.66
CCDC88AQ3V6T2 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC19.19■□□□□ 0.66
CCDC88AQ3V6T2 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC19.19■□□□□ 0.66
CCDC88AQ3V6T2 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC88AQ3V6T2 SERPINA13P-202ENST00000478994 924 ntBASIC19.19■□□□□ 0.66
CCDC88AQ3V6T2 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC19.19■□□□□ 0.66
CCDC88AQ3V6T2 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC19.19■□□□□ 0.66
CCDC88AQ3V6T2 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC19.19■□□□□ 0.66
CCDC88AQ3V6T2 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC19.19■□□□□ 0.66
CCDC88AQ3V6T2 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC19.19■□□□□ 0.66
CCDC88AQ3V6T2 AL450472.2-201ENST00000603663 1156 ntBASIC19.19■□□□□ 0.66
CCDC88AQ3V6T2 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC19.19■□□□□ 0.66
CCDC88AQ3V6T2 AC138649.2-201ENST00000615886 705 ntBASIC19.19■□□□□ 0.66
CCDC88AQ3V6T2 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC88AQ3V6T2 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
CCDC88AQ3V6T2 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC19.19■□□□□ 0.66
CCDC88AQ3V6T2 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC88AQ3V6T2 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC19.19■□□□□ 0.66
CCDC88AQ3V6T2 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC19.19■□□□□ 0.66
CCDC88AQ3V6T2 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
CCDC88AQ3V6T2 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC88AQ3V6T2 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC88AQ3V6T2 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC19.19■□□□□ 0.66
CCDC88AQ3V6T2 AC092978.1-202ENST00000637590 1327 ntBASIC19.19■□□□□ 0.66
CCDC88AQ3V6T2 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC88AQ3V6T2 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC19.18■□□□□ 0.66
CCDC88AQ3V6T2 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
CCDC88AQ3V6T2 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC88AQ3V6T2 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC88AQ3V6T2 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC19.18■□□□□ 0.66
CCDC88AQ3V6T2 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
CCDC88AQ3V6T2 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC88AQ3V6T2 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
CCDC88AQ3V6T2 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
CCDC88AQ3V6T2 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC88AQ3V6T2 NKAIN1P1-201ENST00000435754 582 ntBASIC19.18■□□□□ 0.66
CCDC88AQ3V6T2 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC19.18■□□□□ 0.66
CCDC88AQ3V6T2 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC19.18■□□□□ 0.66
CCDC88AQ3V6T2 RERG-205ENST00000537647 935 ntTSL 2 BASIC19.18■□□□□ 0.66
CCDC88AQ3V6T2 AC005730.2-201ENST00000564549 1184 ntBASIC19.18■□□□□ 0.66
CCDC88AQ3V6T2 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms