Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC144BQ3MJ40 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC144BQ3MJ40 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC18.54■□□□□ 0.56
CCDC144BQ3MJ40 AL080243.2-201ENST00000418783 582 ntBASIC18.54■□□□□ 0.56
CCDC144BQ3MJ40 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC18.54■□□□□ 0.56
CCDC144BQ3MJ40 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC18.54■□□□□ 0.56
CCDC144BQ3MJ40 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC18.54■□□□□ 0.56
CCDC144BQ3MJ40 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC18.54■□□□□ 0.56
CCDC144BQ3MJ40 API5-211ENST00000534695 560 ntTSL 5 BASIC18.54■□□□□ 0.56
CCDC144BQ3MJ40 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC18.54■□□□□ 0.56
CCDC144BQ3MJ40 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC18.54■□□□□ 0.56
CCDC144BQ3MJ40 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
CCDC144BQ3MJ40 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC18.54■□□□□ 0.56
CCDC144BQ3MJ40 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC144BQ3MJ40 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC144BQ3MJ40 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
CCDC144BQ3MJ40 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC18.54■□□□□ 0.56
CCDC144BQ3MJ40 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC144BQ3MJ40 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CCDC144BQ3MJ40 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC144BQ3MJ40 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC144BQ3MJ40 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
CCDC144BQ3MJ40 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC144BQ3MJ40 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC18.53■□□□□ 0.56
CCDC144BQ3MJ40 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC18.53■□□□□ 0.56
CCDC144BQ3MJ40 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC144BQ3MJ40 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC144BQ3MJ40 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC144BQ3MJ40 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
CCDC144BQ3MJ40 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC144BQ3MJ40 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC144BQ3MJ40 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC144BQ3MJ40 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC144BQ3MJ40 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
CCDC144BQ3MJ40 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC18.53■□□□□ 0.56
CCDC144BQ3MJ40 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC144BQ3MJ40 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC144BQ3MJ40 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC144BQ3MJ40 NAA50-208ENST00000497255 789 ntTSL 5 BASIC18.53■□□□□ 0.56
CCDC144BQ3MJ40 AC135586.1-201ENST00000539323 574 ntBASIC18.53■□□□□ 0.56
CCDC144BQ3MJ40 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC18.53■□□□□ 0.56
CCDC144BQ3MJ40 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC144BQ3MJ40 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC18.53■□□□□ 0.56
CCDC144BQ3MJ40 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC144BQ3MJ40 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC18.53■□□□□ 0.56
CCDC144BQ3MJ40 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC18.53■□□□□ 0.56
CCDC144BQ3MJ40 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC144BQ3MJ40 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC144BQ3MJ40 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC144BQ3MJ40 GGT3P-204ENST00000453783 1664 ntBASIC18.53■□□□□ 0.56
CCDC144BQ3MJ40 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
CCDC144BQ3MJ40 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC144BQ3MJ40 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC18.53■□□□□ 0.56
CCDC144BQ3MJ40 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC144BQ3MJ40 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC18.52■□□□□ 0.56
CCDC144BQ3MJ40 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC144BQ3MJ40 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC18.52■□□□□ 0.56
CCDC144BQ3MJ40 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
CCDC144BQ3MJ40 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC18.52■□□□□ 0.56
CCDC144BQ3MJ40 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC144BQ3MJ40 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC18.52■□□□□ 0.56
CCDC144BQ3MJ40 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC144BQ3MJ40 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC144BQ3MJ40 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC144BQ3MJ40 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC144BQ3MJ40 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC144BQ3MJ40 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC144BQ3MJ40 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC18.52■□□□□ 0.56
CCDC144BQ3MJ40 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC144BQ3MJ40 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC144BQ3MJ40 AL353779.1-201ENST00000434793 351 ntBASIC18.52■□□□□ 0.56
CCDC144BQ3MJ40 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC18.52■□□□□ 0.56
CCDC144BQ3MJ40 KRT17P7-201ENST00000451704 1104 ntBASIC18.52■□□□□ 0.56
CCDC144BQ3MJ40 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC18.52■□□□□ 0.56
CCDC144BQ3MJ40 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
CCDC144BQ3MJ40 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC144BQ3MJ40 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC144BQ3MJ40 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC18.52■□□□□ 0.56
CCDC144BQ3MJ40 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC18.52■□□□□ 0.56
CCDC144BQ3MJ40 TNRC18P2-201ENST00000417666 2714 ntBASIC18.52■□□□□ 0.56
CCDC144BQ3MJ40 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
CCDC144BQ3MJ40 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC18.52■□□□□ 0.56
CCDC144BQ3MJ40 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC144BQ3MJ40 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CCDC144BQ3MJ40 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CCDC144BQ3MJ40 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CCDC144BQ3MJ40 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.55
CCDC144BQ3MJ40 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC18.52■□□□□ 0.55
CCDC144BQ3MJ40 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.55
CCDC144BQ3MJ40 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC18.52■□□□□ 0.55
CCDC144BQ3MJ40 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CCDC144BQ3MJ40 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.55
CCDC144BQ3MJ40 GGT4P-201ENST00000623672 1708 ntBASIC18.52■□□□□ 0.55
CCDC144BQ3MJ40 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 OR6D1P-203ENST00000641209 4860 ntBASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC18.51■□□□□ 0.55
CCDC144BQ3MJ40 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms