Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC16.53■□□□□ 0.24
CHD9Q3L8U1 KLF2P2-201ENST00000416807 1039 ntBASIC16.53■□□□□ 0.24
CHD9Q3L8U1 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC16.53■□□□□ 0.24
CHD9Q3L8U1 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC16.53■□□□□ 0.24
CHD9Q3L8U1 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CHD9Q3L8U1 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CHD9Q3L8U1 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CHD9Q3L8U1 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CHD9Q3L8U1 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC16.52■□□□□ 0.24
CHD9Q3L8U1 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CHD9Q3L8U1 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
CHD9Q3L8U1 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
CHD9Q3L8U1 NOC2LP2-201ENST00000407594 1944 ntBASIC16.52■□□□□ 0.24
CHD9Q3L8U1 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CHD9Q3L8U1 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
CHD9Q3L8U1 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CHD9Q3L8U1 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CHD9Q3L8U1 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CHD9Q3L8U1 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CHD9Q3L8U1 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CHD9Q3L8U1 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC16.52■□□□□ 0.24
CHD9Q3L8U1 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC16.52■□□□□ 0.24
CHD9Q3L8U1 PHKG1P2-201ENST00000457537 863 ntBASIC16.52■□□□□ 0.24
CHD9Q3L8U1 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
CHD9Q3L8U1 BNIP3P13-201ENST00000599968 566 ntBASIC16.52■□□□□ 0.24
CHD9Q3L8U1 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CHD9Q3L8U1 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC16.52■□□□□ 0.23
CHD9Q3L8U1 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.23
CHD9Q3L8U1 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
CHD9Q3L8U1 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
CHD9Q3L8U1 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC16.52■□□□□ 0.23
CHD9Q3L8U1 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
CHD9Q3L8U1 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
CHD9Q3L8U1 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC16.52■□□□□ 0.23
CHD9Q3L8U1 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CHD9Q3L8U1 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CHD9Q3L8U1 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CHD9Q3L8U1 PFN2-202ENST00000423691 911 ntTSL 2 BASIC16.52■□□□□ 0.23
CHD9Q3L8U1 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
CHD9Q3L8U1 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CHD9Q3L8U1 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC16.52■□□□□ 0.23
CHD9Q3L8U1 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CHD9Q3L8U1 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CHD9Q3L8U1 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
CHD9Q3L8U1 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
CHD9Q3L8U1 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
CHD9Q3L8U1 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC16.51■□□□□ 0.23
CHD9Q3L8U1 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC16.51■□□□□ 0.23
CHD9Q3L8U1 AL161670.2-201ENST00000557650 1227 ntBASIC16.51■□□□□ 0.23
CHD9Q3L8U1 NPM1P43-201ENST00000558669 786 ntBASIC16.51■□□□□ 0.23
CHD9Q3L8U1 CMC2-214ENST00000565925 640 ntTSL 5 BASIC16.51■□□□□ 0.23
CHD9Q3L8U1 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC16.51■□□□□ 0.23
CHD9Q3L8U1 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC16.51■□□□□ 0.23
CHD9Q3L8U1 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC16.51■□□□□ 0.23
CHD9Q3L8U1 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CHD9Q3L8U1 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CHD9Q3L8U1 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CHD9Q3L8U1 ALOX12P2-203ENST00000570921 1945 ntBASIC16.51■□□□□ 0.23
CHD9Q3L8U1 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CHD9Q3L8U1 AP001282.1-201ENST00000531301 1499 ntBASIC16.51■□□□□ 0.23
CHD9Q3L8U1 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC16.51■□□□□ 0.23
CHD9Q3L8U1 AL133267.1-201ENST00000398220 340 ntBASIC16.51■□□□□ 0.23
CHD9Q3L8U1 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC16.51■□□□□ 0.23
CHD9Q3L8U1 AC025181.2-201ENST00000606994 802 ntBASIC16.51■□□□□ 0.23
CHD9Q3L8U1 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CHD9Q3L8U1 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CHD9Q3L8U1 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHD9Q3L8U1 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC16.5■□□□□ 0.23
CHD9Q3L8U1 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHD9Q3L8U1 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHD9Q3L8U1 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHD9Q3L8U1 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CHD9Q3L8U1 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHD9Q3L8U1 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHD9Q3L8U1 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC16.5■□□□□ 0.23
CHD9Q3L8U1 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
CHD9Q3L8U1 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CHD9Q3L8U1 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
CHD9Q3L8U1 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC16.5■□□□□ 0.23
CHD9Q3L8U1 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
CHD9Q3L8U1 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC16.5■□□□□ 0.23
CHD9Q3L8U1 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
CHD9Q3L8U1 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHD9Q3L8U1 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHD9Q3L8U1 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CHD9Q3L8U1 AC007274.2-201ENST00000421675 662 ntBASIC16.5■□□□□ 0.23
CHD9Q3L8U1 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC16.5■□□□□ 0.23
CHD9Q3L8U1 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC16.5■□□□□ 0.23
CHD9Q3L8U1 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC16.5■□□□□ 0.23
CHD9Q3L8U1 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC16.5■□□□□ 0.23
CHD9Q3L8U1 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
CHD9Q3L8U1 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC16.5■□□□□ 0.23
CHD9Q3L8U1 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
CHD9Q3L8U1 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
CHD9Q3L8U1 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC16.5■□□□□ 0.23
CHD9Q3L8U1 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
CHD9Q3L8U1 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHD9Q3L8U1 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC16.49■□□□□ 0.23
CHD9Q3L8U1 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC16.49■□□□□ 0.23
CHD9Q3L8U1 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 67 ms