Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC15.12■□□□□ 0.01
RAE1P78406 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC15.12■□□□□ 0.01
RAE1P78406 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC15.12■□□□□ 0.01
RAE1P78406 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
RAE1P78406 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
RAE1P78406 AC023157.3-201ENST00000619086 2088 ntBASIC15.12■□□□□ 0.01
RAE1P78406 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RAE1P78406 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RAE1P78406 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RAE1P78406 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC15.12■□□□□ 0.01
RAE1P78406 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
RAE1P78406 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
RAE1P78406 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
RAE1P78406 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC15.12■□□□□ 0.01
RAE1P78406 AC211486.1-202ENST00000416371 468 ntBASIC15.12■□□□□ 0.01
RAE1P78406 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC15.12■□□□□ 0.01
RAE1P78406 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC15.12■□□□□ 0.01
RAE1P78406 AC211476.1-201ENST00000503899 468 ntBASIC15.12■□□□□ 0.01
RAE1P78406 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC15.12■□□□□ 0.01
RAE1P78406 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC15.12■□□□□ 0.01
RAE1P78406 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RAE1P78406 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC15.12■□□□□ 0.01
RAE1P78406 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC15.12■□□□□ 0.01
RAE1P78406 AC003101.2-201ENST00000612557 442 ntBASIC15.12■□□□□ 0.01
RAE1P78406 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC15.12■□□□□ 0.01
RAE1P78406 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RAE1P78406 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RAE1P78406 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
RAE1P78406 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RAE1P78406 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RAE1P78406 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC15.12■□□□□ 0.01
RAE1P78406 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RAE1P78406 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
RAE1P78406 AL607033.1-201ENST00000623900 1599 ntBASIC15.11■□□□□ 0.01
RAE1P78406 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC15.11■□□□□ 0.01
RAE1P78406 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
RAE1P78406 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
RAE1P78406 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RAE1P78406 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC15.11■□□□□ 0.01
RAE1P78406 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RAE1P78406 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
RAE1P78406 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RAE1P78406 SPDYE17-201ENST00000412399 783 ntBASIC15.11■□□□□ 0.01
RAE1P78406 AC136604.1-201ENST00000418535 575 ntBASIC15.11■□□□□ 0.01
RAE1P78406 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC15.11■□□□□ 0.01
RAE1P78406 NME4-207ENST00000450036 985 ntTSL 3 BASIC15.11■□□□□ 0.01
RAE1P78406 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
RAE1P78406 AC023141.5-201ENST00000458585 616 ntBASIC15.11■□□□□ 0.01
RAE1P78406 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC15.11■□□□□ 0.01
RAE1P78406 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC15.11■□□□□ 0.01
RAE1P78406 SUOX-214ENST00000551841 906 ntTSL 3 BASIC15.11■□□□□ 0.01
RAE1P78406 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC15.11■□□□□ 0.01
RAE1P78406 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
RAE1P78406 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC15.11■□□□□ 0.01
RAE1P78406 LITAF-210ENST00000571976 548 ntTSL 2 BASIC15.11■□□□□ 0.01
RAE1P78406 LITAF-214ENST00000574703 486 ntTSL 2 BASIC15.11■□□□□ 0.01
RAE1P78406 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC15.11■□□□□ 0.01
RAE1P78406 METTL23-205ENST00000588302 925 ntTSL 5 BASIC15.11■□□□□ 0.01
RAE1P78406 RN7SL828P-201ENST00000607615 303 ntBASIC15.11■□□□□ 0.01
RAE1P78406 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RAE1P78406 AC007967.4-201ENST00000614700 386 ntBASIC15.11■□□□□ 0.01
RAE1P78406 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC15.11■□□□□ 0.01
RAE1P78406 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC15.11■□□□□ 0.01
RAE1P78406 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RAE1P78406 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC15.11■□□□□ 0.01
RAE1P78406 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RAE1P78406 C18orf15-201ENST00000623680 2534 ntBASIC15.11■□□□□ 0.01
RAE1P78406 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC15.11■□□□□ 0.01
RAE1P78406 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RAE1P78406 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RAE1P78406 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC15.11■□□□□ 0.01
RAE1P78406 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RAE1P78406 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
RAE1P78406 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RAE1P78406 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RAE1P78406 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC15.11■□□□□ 0.01
RAE1P78406 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RAE1P78406 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
RAE1P78406 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RAE1P78406 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
RAE1P78406 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
RAE1P78406 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RAE1P78406 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
RAE1P78406 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RAE1P78406 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
RAE1P78406 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC15.1■□□□□ 0.01
RAE1P78406 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
RAE1P78406 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
RAE1P78406 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC15.1■□□□□ 0.01
RAE1P78406 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC15.1■□□□□ 0.01
RAE1P78406 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
RAE1P78406 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
RAE1P78406 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
RAE1P78406 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC15.1■□□□□ 0.01
RAE1P78406 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC15.1■□□□□ 0.01
RAE1P78406 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC15.1■□□□□ 0.01
RAE1P78406 FXR1-221ENST00000491674 365 ntTSL 2 BASIC15.1■□□□□ 0.01
RAE1P78406 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
RAE1P78406 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC15.1■□□□□ 0.01
RAE1P78406 AC092865.5-201ENST00000545435 363 ntBASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 133.9 ms