Protein–RNA interactions for Protein: P49454

CENPF, Centromere protein F, humanhuman

Predictions only

Length 3,210 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CENPFP49454 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CENPFP49454 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
CENPFP49454 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CENPFP49454 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CENPFP49454 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
CENPFP49454 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC17.66■□□□□ 0.42
CENPFP49454 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
CENPFP49454 AL592424.1-201ENST00000563624 1536 ntBASIC17.66■□□□□ 0.42
CENPFP49454 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
CENPFP49454 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CENPFP49454 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CENPFP49454 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC17.66■□□□□ 0.42
CENPFP49454 LINC01481-204ENST00000550216 494 ntTSL 2 BASIC17.66■□□□□ 0.42
CENPFP49454 AC135983.4-201ENST00000564116 1262 ntBASIC17.66■□□□□ 0.42
CENPFP49454 KLK11-210ENST00000600362 759 ntTSL 3 BASIC17.66■□□□□ 0.42
CENPFP49454 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC17.66■□□□□ 0.42
CENPFP49454 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CENPFP49454 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CENPFP49454 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.66■□□□□ 0.42
CENPFP49454 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
CENPFP49454 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC17.66■□□□□ 0.42
CENPFP49454 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CENPFP49454 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CENPFP49454 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CENPFP49454 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CENPFP49454 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CENPFP49454 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
CENPFP49454 ACKR1-201ENST00000368121 1240 ntBASIC17.66■□□□□ 0.42
CENPFP49454 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC17.66■□□□□ 0.42
CENPFP49454 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC17.66■□□□□ 0.42
CENPFP49454 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC17.66■□□□□ 0.42
CENPFP49454 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
CENPFP49454 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CENPFP49454 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CENPFP49454 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CENPFP49454 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CENPFP49454 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CENPFP49454 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CENPFP49454 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC17.65■□□□□ 0.42
CENPFP49454 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CENPFP49454 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC17.65■□□□□ 0.42
CENPFP49454 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC17.65■□□□□ 0.42
CENPFP49454 KRTAP19-9P-201ENST00000421795 191 ntBASIC17.65■□□□□ 0.42
CENPFP49454 PFN2-202ENST00000423691 911 ntTSL 2 BASIC17.65■□□□□ 0.42
CENPFP49454 AL596276.2-201ENST00000447525 331 ntBASIC17.65■□□□□ 0.42
CENPFP49454 SLED1-202ENST00000512051 380 ntBASIC17.65■□□□□ 0.42
CENPFP49454 COX6A1P2-201ENST00000620597 330 ntBASIC17.65■□□□□ 0.42
CENPFP49454 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CENPFP49454 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC17.65■□□□□ 0.42
CENPFP49454 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CENPFP49454 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CENPFP49454 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
CENPFP49454 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CENPFP49454 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC17.65■□□□□ 0.42
CENPFP49454 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC17.65■□□□□ 0.42
CENPFP49454 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CENPFP49454 RNA5SP486-201ENST00000515961 83 ntBASIC17.65■□□□□ 0.42
CENPFP49454 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC17.65■□□□□ 0.42
CENPFP49454 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC17.65■□□□□ 0.42
CENPFP49454 AC073413.1-201ENST00000603927 732 ntBASIC17.65■□□□□ 0.42
CENPFP49454 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
CENPFP49454 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CENPFP49454 FLJ38576-201ENST00000623820 2459 ntBASIC17.65■□□□□ 0.42
CENPFP49454 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.65■□□□□ 0.42
CENPFP49454 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC17.65■□□□□ 0.42
CENPFP49454 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC17.65■□□□□ 0.42
CENPFP49454 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
CENPFP49454 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC17.64■□□□□ 0.42
CENPFP49454 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
CENPFP49454 AC136604.1-201ENST00000418535 575 ntBASIC17.64■□□□□ 0.42
CENPFP49454 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
CENPFP49454 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC17.64■□□□□ 0.42
CENPFP49454 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC17.64■□□□□ 0.42
CENPFP49454 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.42
CENPFP49454 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
CENPFP49454 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
CENPFP49454 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
CENPFP49454 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC17.64■□□□□ 0.42
CENPFP49454 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CENPFP49454 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CENPFP49454 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CENPFP49454 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC17.64■□□□□ 0.41
CENPFP49454 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CENPFP49454 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CENPFP49454 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC17.64■□□□□ 0.41
CENPFP49454 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CENPFP49454 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CENPFP49454 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CENPFP49454 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
CENPFP49454 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC17.64■□□□□ 0.41
CENPFP49454 RN7SL48P-201ENST00000579283 293 ntBASIC17.64■□□□□ 0.41
CENPFP49454 AC015910.1-201ENST00000579400 975 ntBASIC17.64■□□□□ 0.41
CENPFP49454 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
CENPFP49454 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC17.64■□□□□ 0.41
CENPFP49454 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC17.64■□□□□ 0.41
CENPFP49454 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CENPFP49454 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC17.64■□□□□ 0.41
CENPFP49454 AC234782.1-201ENST00000451950 919 ntBASIC17.64■□□□□ 0.41
CENPFP49454 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
CENPFP49454 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 76.6 ms