Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
LHX1P48742 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LHX1P48742 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LHX1P48742 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
LHX1P48742 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LHX1P48742 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
LHX1P48742 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LHX1P48742 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LHX1P48742 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC16.84■□□□□ 0.29
LHX1P48742 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC16.84■□□□□ 0.29
LHX1P48742 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC16.84■□□□□ 0.29
LHX1P48742 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC16.84■□□□□ 0.29
LHX1P48742 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC16.84■□□□□ 0.29
LHX1P48742 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LHX1P48742 AL513523.2-202ENST00000427283 2040 ntBASIC16.84■□□□□ 0.29
LHX1P48742 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LHX1P48742 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LHX1P48742 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LHX1P48742 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LHX1P48742 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LHX1P48742 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
LHX1P48742 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC16.84■□□□□ 0.29
LHX1P48742 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
LHX1P48742 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC16.84■□□□□ 0.29
LHX1P48742 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
LHX1P48742 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC16.84■□□□□ 0.29
LHX1P48742 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC16.84■□□□□ 0.29
LHX1P48742 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC16.84■□□□□ 0.29
LHX1P48742 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
LHX1P48742 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
LHX1P48742 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC16.84■□□□□ 0.29
LHX1P48742 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC16.84■□□□□ 0.29
LHX1P48742 AC025048.6-201ENST00000634326 1161 ntBASIC16.84■□□□□ 0.29
LHX1P48742 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
LHX1P48742 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
LHX1P48742 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LHX1P48742 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LHX1P48742 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LHX1P48742 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
LHX1P48742 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LHX1P48742 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LHX1P48742 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LHX1P48742 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC16.84■□□□□ 0.29
LHX1P48742 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LHX1P48742 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC16.84■□□□□ 0.29
LHX1P48742 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC16.84■□□□□ 0.29
LHX1P48742 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC16.84■□□□□ 0.29
LHX1P48742 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LHX1P48742 FLII-221ENST00000578558 2377 ntTSL 5 BASIC16.84■□□□□ 0.29
LHX1P48742 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
LHX1P48742 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC16.83■□□□□ 0.29
LHX1P48742 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.29
LHX1P48742 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC16.83■□□□□ 0.29
LHX1P48742 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC16.83■□□□□ 0.29
LHX1P48742 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
LHX1P48742 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC16.83■□□□□ 0.29
LHX1P48742 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
LHX1P48742 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
LHX1P48742 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
LHX1P48742 COPE-202ENST00000349893 948 ntTSL 2 BASIC16.83■□□□□ 0.28
LHX1P48742 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LHX1P48742 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC16.83■□□□□ 0.28
LHX1P48742 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC16.83■□□□□ 0.28
LHX1P48742 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC16.83■□□□□ 0.28
LHX1P48742 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
LHX1P48742 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
LHX1P48742 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC16.83■□□□□ 0.28
LHX1P48742 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC16.83■□□□□ 0.28
LHX1P48742 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC16.83■□□□□ 0.28
LHX1P48742 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC16.83■□□□□ 0.28
LHX1P48742 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC16.83■□□□□ 0.28
LHX1P48742 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
LHX1P48742 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC16.83■□□□□ 0.28
LHX1P48742 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LHX1P48742 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC16.83■□□□□ 0.28
LHX1P48742 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC16.83■□□□□ 0.28
LHX1P48742 AC024909.3-201ENST00000611513 2257 ntBASIC16.83■□□□□ 0.28
LHX1P48742 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LHX1P48742 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC16.83■□□□□ 0.28
LHX1P48742 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC16.83■□□□□ 0.28
LHX1P48742 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.28
LHX1P48742 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC16.83■□□□□ 0.28
LHX1P48742 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LHX1P48742 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LHX1P48742 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LHX1P48742 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LHX1P48742 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
LHX1P48742 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC16.82■□□□□ 0.28
LHX1P48742 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LHX1P48742 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LHX1P48742 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LHX1P48742 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LHX1P48742 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
LHX1P48742 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
LHX1P48742 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LHX1P48742 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LHX1P48742 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LHX1P48742 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
LHX1P48742 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LHX1P48742 AC138969.3-201ENST00000546612 1459 ntBASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms