Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC15.09■□□□□ 0.01
RFX3P48380 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
RFX3P48380 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RFX3P48380 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RFX3P48380 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
RFX3P48380 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC15.09■□□□□ 0.01
RFX3P48380 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC15.09■□□□□ 0.01
RFX3P48380 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RFX3P48380 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC15.09■□□□□ 0.01
RFX3P48380 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
RFX3P48380 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
RFX3P48380 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RFX3P48380 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RFX3P48380 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC15.09■□□□□ 0.01
RFX3P48380 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RFX3P48380 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RFX3P48380 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RFX3P48380 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RFX3P48380 UPF3AP3-201ENST00000420996 769 ntBASIC15.09■□□□□ 0.01
RFX3P48380 ADH5P3-201ENST00000433842 1137 ntBASIC15.09■□□□□ 0.01
RFX3P48380 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC15.09■□□□□ 0.01
RFX3P48380 AC005237.2-201ENST00000434368 219 ntBASIC15.09■□□□□ 0.01
RFX3P48380 SPCS2P4-201ENST00000436160 681 ntBASIC15.09■□□□□ 0.01
RFX3P48380 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC15.09■□□□□ 0.01
RFX3P48380 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC15.09■□□□□ 0.01
RFX3P48380 AL592309.1-201ENST00000443127 649 ntBASIC15.09■□□□□ 0.01
RFX3P48380 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC15.09■□□□□ 0.01
RFX3P48380 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC15.09■□□□□ 0.01
RFX3P48380 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC15.09■□□□□ 0.01
RFX3P48380 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
RFX3P48380 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
RFX3P48380 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
RFX3P48380 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC15.09■□□□□ 0.01
RFX3P48380 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC15.09■□□□□ 0.01
RFX3P48380 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC15.09■□□□□ 0.01
RFX3P48380 SUPT20HL2-201ENST00000486479 2409 ntBASIC15.09■□□□□ 0.01
RFX3P48380 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
RFX3P48380 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RFX3P48380 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC15.09■□□□□ 0.01
RFX3P48380 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC15.09■□□□□ 0.01
RFX3P48380 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC15.09■□□□□ 0.01
RFX3P48380 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
RFX3P48380 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC15.09■□□□□ 0.01
RFX3P48380 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
RFX3P48380 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
RFX3P48380 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC15.09■□□□□ 0.01
RFX3P48380 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
RFX3P48380 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC15.09■□□□□ 0.01
RFX3P48380 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
RFX3P48380 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
RFX3P48380 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0.01
RFX3P48380 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC15.08■□□□□ 0.01
RFX3P48380 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
RFX3P48380 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
RFX3P48380 OR2I1P-209ENST00000641730 5365 ntBASIC15.08■□□□□ 0.01
RFX3P48380 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0.01
RFX3P48380 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0.01
RFX3P48380 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
RFX3P48380 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC15.08■□□□□ 0.01
RFX3P48380 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
RFX3P48380 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
RFX3P48380 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC15.08■□□□□ 0.01
RFX3P48380 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC15.08■□□□□ 0.01
RFX3P48380 AL589702.1-201ENST00000641229 1509 ntBASIC15.08■□□□□ 0.01
RFX3P48380 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0.01
RFX3P48380 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
RFX3P48380 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
RFX3P48380 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
RFX3P48380 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC15.08■□□□□ 0
RFX3P48380 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC15.08■□□□□ 0
RFX3P48380 GOLGA2P9-201ENST00000596977 1937 ntBASIC15.08■□□□□ 0
RFX3P48380 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
RFX3P48380 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
RFX3P48380 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
RFX3P48380 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC15.08■□□□□ 0
RFX3P48380 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC15.08■□□□□ 0
RFX3P48380 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC15.08■□□□□ 0
RFX3P48380 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
RFX3P48380 KRT18P13-201ENST00000400056 1290 ntBASIC15.08■□□□□ 0
RFX3P48380 RPSAP43-201ENST00000402237 625 ntBASIC15.08■□□□□ 0
RFX3P48380 COA5-202ENST00000409997 557 ntTSL 4 BASIC15.08■□□□□ 0
RFX3P48380 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC15.08■□□□□ 0
RFX3P48380 AC211486.1-202ENST00000416371 468 ntBASIC15.08■□□□□ 0
RFX3P48380 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC15.08■□□□□ 0
RFX3P48380 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC15.08■□□□□ 0
RFX3P48380 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC15.08■□□□□ 0
RFX3P48380 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC15.08■□□□□ 0
RFX3P48380 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC15.08■□□□□ 0
RFX3P48380 AC211476.1-201ENST00000503899 468 ntBASIC15.08■□□□□ 0
RFX3P48380 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC15.08■□□□□ 0
RFX3P48380 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC15.08■□□□□ 0
RFX3P48380 AC105233.2-201ENST00000523697 349 ntBASIC15.08■□□□□ 0
RFX3P48380 AF228730.5-201ENST00000530288 346 ntBASIC15.08■□□□□ 0
RFX3P48380 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC15.08■□□□□ 0
RFX3P48380 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC15.08■□□□□ 0
RFX3P48380 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC15.08■□□□□ 0
RFX3P48380 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC15.08■□□□□ 0
RFX3P48380 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
RFX3P48380 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
RFX3P48380 AC008267.7-201ENST00000624570 1194 ntBASIC15.08■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 60.1 ms