Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
CXCL12P48061 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CXCL12P48061 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC15.73■□□□□ 0.11
CXCL12P48061 KRTAP10-13P-201ENST00000412914 571 ntBASIC15.73■□□□□ 0.11
CXCL12P48061 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC15.73■□□□□ 0.11
CXCL12P48061 BX284668.4-201ENST00000453917 508 ntBASIC15.73■□□□□ 0.11
CXCL12P48061 RPSAP36-202ENST00000494591 1261 ntBASIC15.73■□□□□ 0.11
CXCL12P48061 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC15.73■□□□□ 0.11
CXCL12P48061 ADM-202ENST00000524948 584 ntTSL 2 BASIC15.73■□□□□ 0.11
CXCL12P48061 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC15.73■□□□□ 0.11
CXCL12P48061 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC15.73■□□□□ 0.11
CXCL12P48061 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC15.73■□□□□ 0.11
CXCL12P48061 EEF1DP1-201ENST00000585891 896 ntBASIC15.73■□□□□ 0.11
CXCL12P48061 AC016629.1-201ENST00000596579 586 ntBASIC15.73■□□□□ 0.11
CXCL12P48061 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC15.73■□□□□ 0.11
CXCL12P48061 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC15.73■□□□□ 0.11
CXCL12P48061 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CXCL12P48061 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CXCL12P48061 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CXCL12P48061 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC15.73■□□□□ 0.11
CXCL12P48061 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CXCL12P48061 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
CXCL12P48061 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CXCL12P48061 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC15.73■□□□□ 0.11
CXCL12P48061 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
CXCL12P48061 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
CXCL12P48061 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
CXCL12P48061 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CXCL12P48061 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC15.73■□□□□ 0.11
CXCL12P48061 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC15.73■□□□□ 0.11
CXCL12P48061 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
CXCL12P48061 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CXCL12P48061 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC15.73■□□□□ 0.11
CXCL12P48061 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CXCL12P48061 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CXCL12P48061 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CXCL12P48061 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC15.72■□□□□ 0.11
CXCL12P48061 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
CXCL12P48061 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CXCL12P48061 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC15.72■□□□□ 0.11
CXCL12P48061 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CXCL12P48061 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CXCL12P48061 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CXCL12P48061 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC15.72■□□□□ 0.11
CXCL12P48061 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CXCL12P48061 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
CXCL12P48061 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CXCL12P48061 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
CXCL12P48061 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC15.72■□□□□ 0.11
CXCL12P48061 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC15.72■□□□□ 0.11
CXCL12P48061 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
CXCL12P48061 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CXCL12P48061 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CXCL12P48061 CMC2-214ENST00000565925 640 ntTSL 5 BASIC15.72■□□□□ 0.11
CXCL12P48061 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC15.72■□□□□ 0.11
CXCL12P48061 AC097359.3-201ENST00000603982 1210 ntBASIC15.72■□□□□ 0.11
CXCL12P48061 AC006453.4-201ENST00000636949 1252 ntBASIC15.72■□□□□ 0.11
CXCL12P48061 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
CXCL12P48061 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CXCL12P48061 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC15.72■□□□□ 0.11
CXCL12P48061 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CXCL12P48061 AC105020.1-201ENST00000435356 2205 ntBASIC15.72■□□□□ 0.11
CXCL12P48061 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
CXCL12P48061 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC15.72■□□□□ 0.11
CXCL12P48061 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CXCL12P48061 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CXCL12P48061 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CXCL12P48061 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
CXCL12P48061 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
CXCL12P48061 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC15.71■□□□□ 0.11
CXCL12P48061 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
CXCL12P48061 BANP-227ENST00000626016 2144 ntTSL 2 BASIC15.71■□□□□ 0.11
CXCL12P48061 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC15.71■□□□□ 0.11
CXCL12P48061 KRT8P35-201ENST00000483942 1338 ntBASIC15.71■□□□□ 0.11
CXCL12P48061 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC15.71■□□□□ 0.11
CXCL12P48061 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
CXCL12P48061 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC15.71■□□□□ 0.11
CXCL12P48061 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
CXCL12P48061 OS9-205ENST00000413095 1660 ntTSL 2 BASIC15.71■□□□□ 0.11
CXCL12P48061 AL138709.1-201ENST00000614840 1693 ntBASIC15.71■□□□□ 0.11
CXCL12P48061 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CXCL12P48061 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CXCL12P48061 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC15.71■□□□□ 0.11
CXCL12P48061 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CXCL12P48061 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CXCL12P48061 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CXCL12P48061 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC15.71■□□□□ 0.11
CXCL12P48061 CSH2-202ENST00000345366 598 ntTSL 5 BASIC15.71■□□□□ 0.11
CXCL12P48061 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CXCL12P48061 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
CXCL12P48061 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC15.71■□□□□ 0.11
CXCL12P48061 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC15.71■□□□□ 0.11
CXCL12P48061 UPF3AP2-201ENST00000457924 1132 ntBASIC15.71■□□□□ 0.11
CXCL12P48061 APOA2-204ENST00000464492 530 ntTSL 3 BASIC15.71■□□□□ 0.11
CXCL12P48061 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC15.71■□□□□ 0.11
CXCL12P48061 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CXCL12P48061 HCG18-245ENST00000602550 559 ntTSL 4 BASIC15.71■□□□□ 0.11
CXCL12P48061 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CXCL12P48061 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CXCL12P48061 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 79.2 ms