Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-1P43699 AP001269.4-201ENST00000609611 512 ntBASIC13.15□□□□□ -0.3
NKX2-1P43699 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC13.15□□□□□ -0.3
NKX2-1P43699 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC13.15□□□□□ -0.3
NKX2-1P43699 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC13.15□□□□□ -0.3
NKX2-1P43699 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-1P43699 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-1P43699 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC13.15□□□□□ -0.3
NKX2-1P43699 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-1P43699 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
NKX2-1P43699 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-1P43699 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-1P43699 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC13.15□□□□□ -0.3
NKX2-1P43699 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-1P43699 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC13.15□□□□□ -0.3
NKX2-1P43699 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-1P43699 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
NKX2-1P43699 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
NKX2-1P43699 AC091951.1-201ENST00000512854 2465 ntBASIC13.15□□□□□ -0.3
NKX2-1P43699 AC007686.3-201ENST00000619017 3487 ntBASIC13.15□□□□□ -0.3
NKX2-1P43699 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX2-1P43699 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC13.15□□□□□ -0.31
NKX2-1P43699 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC13.15□□□□□ -0.31
NKX2-1P43699 C18orf15-201ENST00000623680 2534 ntBASIC13.14□□□□□ -0.31
NKX2-1P43699 AC112693.3-201ENST00000624819 1983 ntBASIC13.14□□□□□ -0.31
NKX2-1P43699 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC13.14□□□□□ -0.31
NKX2-1P43699 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC13.14□□□□□ -0.31
NKX2-1P43699 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC13.14□□□□□ -0.31
NKX2-1P43699 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
NKX2-1P43699 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
NKX2-1P43699 AC092127.1-201ENST00000567093 3455 ntBASIC13.14□□□□□ -0.31
NKX2-1P43699 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
NKX2-1P43699 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC13.14□□□□□ -0.31
NKX2-1P43699 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
NKX2-1P43699 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC13.14□□□□□ -0.31
NKX2-1P43699 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
NKX2-1P43699 MARS-233ENST00000628866 2583 ntTSL 5 BASIC13.14□□□□□ -0.31
NKX2-1P43699 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
NKX2-1P43699 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
NKX2-1P43699 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
NKX2-1P43699 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC13.14□□□□□ -0.31
NKX2-1P43699 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
NKX2-1P43699 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
NKX2-1P43699 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC13.14□□□□□ -0.31
NKX2-1P43699 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
NKX2-1P43699 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
NKX2-1P43699 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
NKX2-1P43699 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
NKX2-1P43699 VMO1-203ENST00000416307 712 ntTSL 2 BASIC13.14□□□□□ -0.31
NKX2-1P43699 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
NKX2-1P43699 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC13.14□□□□□ -0.31
NKX2-1P43699 ARTN-206ENST00000472435 402 ntTSL 3 BASIC13.14□□□□□ -0.31
NKX2-1P43699 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC13.14□□□□□ -0.31
NKX2-1P43699 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC13.14□□□□□ -0.31
NKX2-1P43699 TPM1-226ENST00000560959 925 ntTSL 2 BASIC13.14□□□□□ -0.31
NKX2-1P43699 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
NKX2-1P43699 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
NKX2-1P43699 AC099336.1-202ENST00000602961 463 ntBASIC13.14□□□□□ -0.31
NKX2-1P43699 AC069148.1-201ENST00000608741 768 ntBASIC13.14□□□□□ -0.31
NKX2-1P43699 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC13.14□□□□□ -0.31
NKX2-1P43699 AC004706.3-202ENST00000621574 984 ntBASIC13.14□□□□□ -0.31
NKX2-1P43699 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
NKX2-1P43699 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
NKX2-1P43699 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC13.14□□□□□ -0.31
NKX2-1P43699 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
NKX2-1P43699 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC13.14□□□□□ -0.31
NKX2-1P43699 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
NKX2-1P43699 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
NKX2-1P43699 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC13.14□□□□□ -0.31
NKX2-1P43699 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
NKX2-1P43699 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
NKX2-1P43699 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC13.14□□□□□ -0.31
NKX2-1P43699 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
NKX2-1P43699 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
NKX2-1P43699 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
NKX2-1P43699 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
NKX2-1P43699 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
NKX2-1P43699 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
NKX2-1P43699 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
NKX2-1P43699 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
NKX2-1P43699 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC13.14□□□□□ -0.31
NKX2-1P43699 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
NKX2-1P43699 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
NKX2-1P43699 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC13.13□□□□□ -0.31
NKX2-1P43699 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC13.13□□□□□ -0.31
NKX2-1P43699 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
NKX2-1P43699 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
NKX2-1P43699 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
NKX2-1P43699 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC13.13□□□□□ -0.31
NKX2-1P43699 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
NKX2-1P43699 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
NKX2-1P43699 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC13.13□□□□□ -0.31
NKX2-1P43699 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC13.13□□□□□ -0.31
NKX2-1P43699 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
NKX2-1P43699 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
NKX2-1P43699 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
NKX2-1P43699 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
NKX2-1P43699 AC013726.1-201ENST00000563747 2285 ntBASIC13.13□□□□□ -0.31
NKX2-1P43699 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
NKX2-1P43699 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms