Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 AC022748.3-201ENST00000621828 275 ntBASIC18.74■□□□□ 0.59
COL4A5P29400 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC18.74■□□□□ 0.59
COL4A5P29400 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC18.74■□□□□ 0.59
COL4A5P29400 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A5P29400 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A5P29400 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
COL4A5P29400 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A5P29400 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A5P29400 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A5P29400 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
COL4A5P29400 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC18.74■□□□□ 0.59
COL4A5P29400 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A5P29400 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
COL4A5P29400 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC18.74■□□□□ 0.59
COL4A5P29400 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A5P29400 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A5P29400 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A5P29400 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A5P29400 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
COL4A5P29400 AL354877.1-201ENST00000424412 413 ntBASIC18.73■□□□□ 0.59
COL4A5P29400 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC18.73■□□□□ 0.59
COL4A5P29400 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A5P29400 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
COL4A5P29400 NUP210P1-202ENST00000504322 710 ntBASIC18.73■□□□□ 0.59
COL4A5P29400 AL391280.1-201ENST00000506969 1062 ntBASIC18.73■□□□□ 0.59
COL4A5P29400 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC18.73■□□□□ 0.59
COL4A5P29400 FADS2-212ENST00000522639 360 ntTSL 5 BASIC18.73■□□□□ 0.59
COL4A5P29400 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC18.73■□□□□ 0.59
COL4A5P29400 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC18.73■□□□□ 0.59
COL4A5P29400 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC18.73■□□□□ 0.59
COL4A5P29400 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC18.73■□□□□ 0.59
COL4A5P29400 PRKXP1-201ENST00000561423 1122 ntBASIC18.73■□□□□ 0.59
COL4A5P29400 FADS2-215ENST00000574708 385 ntTSL 3 BASIC18.73■□□□□ 0.59
COL4A5P29400 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC18.73■□□□□ 0.59
COL4A5P29400 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A5P29400 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A5P29400 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A5P29400 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A5P29400 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
COL4A5P29400 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A5P29400 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A5P29400 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A5P29400 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A5P29400 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A5P29400 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A5P29400 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A5P29400 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A5P29400 UFM1-202ENST00000379649 846 ntTSL 4 BASIC18.73■□□□□ 0.59
COL4A5P29400 B9D1-203ENST00000395615 805 ntTSL 3 BASIC18.73■□□□□ 0.59
COL4A5P29400 RPL17P11-201ENST00000417593 544 ntBASIC18.73■□□□□ 0.59
COL4A5P29400 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC18.73■□□□□ 0.59
COL4A5P29400 AC106820.3-201ENST00000561653 397 ntBASIC18.73■□□□□ 0.59
COL4A5P29400 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A5P29400 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
COL4A5P29400 AP001002.3-201ENST00000623482 206 ntBASIC18.73■□□□□ 0.59
COL4A5P29400 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A5P29400 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
COL4A5P29400 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A5P29400 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A5P29400 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
COL4A5P29400 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC18.72■□□□□ 0.59
COL4A5P29400 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A5P29400 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A5P29400 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC18.72■□□□□ 0.59
COL4A5P29400 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC18.72■□□□□ 0.59
COL4A5P29400 TUBBP5-203ENST00000508529 1334 ntBASIC18.72■□□□□ 0.59
COL4A5P29400 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A5P29400 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A5P29400 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A5P29400 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A5P29400 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC18.72■□□□□ 0.59
COL4A5P29400 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC18.72■□□□□ 0.59
COL4A5P29400 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A5P29400 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A5P29400 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A5P29400 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC18.72■□□□□ 0.59
COL4A5P29400 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A5P29400 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A5P29400 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A5P29400 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
COL4A5P29400 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
COL4A5P29400 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A5P29400 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
COL4A5P29400 FAM8A4P-201ENST00000435433 1213 ntBASIC18.72■□□□□ 0.59
COL4A5P29400 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A5P29400 COX5BP1-201ENST00000507622 393 ntBASIC18.72■□□□□ 0.59
COL4A5P29400 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC18.72■□□□□ 0.59
COL4A5P29400 MIR4783-201ENST00000580343 82 ntBASIC18.72■□□□□ 0.59
COL4A5P29400 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC18.72■□□□□ 0.59
COL4A5P29400 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC18.72■□□□□ 0.59
COL4A5P29400 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A5P29400 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A5P29400 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A5P29400 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
COL4A5P29400 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A5P29400 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A5P29400 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A5P29400 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A5P29400 AC006449.6-201ENST00000612330 2296 ntBASIC18.72■□□□□ 0.59
COL4A5P29400 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms