Protein–RNA interactions for Protein: P28288

ABCD3, ATP-binding cassette sub-family D member 3, humanhuman

Predictions only

Length 659 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD3P28288 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
ABCD3P28288 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
ABCD3P28288 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
ABCD3P28288 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
ABCD3P28288 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC14.72□□□□□ -0.05
ABCD3P28288 AZGP1P1-201ENST00000411909 902 ntBASIC14.72□□□□□ -0.05
ABCD3P28288 TSSK5P-201ENST00000423978 907 ntBASIC14.72□□□□□ -0.05
ABCD3P28288 HIST3H2BA-201ENST00000436555 524 ntBASIC14.72□□□□□ -0.05
ABCD3P28288 AL512638.1-201ENST00000457493 794 ntBASIC14.72□□□□□ -0.05
ABCD3P28288 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC14.72□□□□□ -0.05
ABCD3P28288 PTK7-212ENST00000476760 902 ntTSL 2 BASIC14.72□□□□□ -0.05
ABCD3P28288 RN7SL618P-201ENST00000477850 296 ntBASIC14.72□□□□□ -0.05
ABCD3P28288 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC14.72□□□□□ -0.05
ABCD3P28288 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC14.72□□□□□ -0.05
ABCD3P28288 RNA5SP421-201ENST00000516864 134 ntBASIC14.72□□□□□ -0.05
ABCD3P28288 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
ABCD3P28288 AL512361.1-201ENST00000554200 418 ntBASIC14.72□□□□□ -0.05
ABCD3P28288 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC14.72□□□□□ -0.05
ABCD3P28288 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC14.72□□□□□ -0.05
ABCD3P28288 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC14.72□□□□□ -0.05
ABCD3P28288 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC14.72□□□□□ -0.05
ABCD3P28288 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
ABCD3P28288 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC14.72□□□□□ -0.05
ABCD3P28288 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
ABCD3P28288 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
ABCD3P28288 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
ABCD3P28288 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
ABCD3P28288 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
ABCD3P28288 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC14.72□□□□□ -0.05
ABCD3P28288 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
ABCD3P28288 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC14.72□□□□□ -0.05
ABCD3P28288 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
ABCD3P28288 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
ABCD3P28288 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC14.72□□□□□ -0.05
ABCD3P28288 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC14.72□□□□□ -0.05
ABCD3P28288 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
ABCD3P28288 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
ABCD3P28288 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
ABCD3P28288 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC14.72□□□□□ -0.05
ABCD3P28288 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC14.72□□□□□ -0.05
ABCD3P28288 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
ABCD3P28288 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
ABCD3P28288 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
ABCD3P28288 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC14.71□□□□□ -0.05
ABCD3P28288 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC14.71□□□□□ -0.05
ABCD3P28288 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
ABCD3P28288 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC14.71□□□□□ -0.05
ABCD3P28288 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC14.71□□□□□ -0.05
ABCD3P28288 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
ABCD3P28288 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
ABCD3P28288 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
ABCD3P28288 AC018892.3-201ENST00000623986 2499 ntBASIC14.71□□□□□ -0.05
ABCD3P28288 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
ABCD3P28288 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.05
ABCD3P28288 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
ABCD3P28288 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
ABCD3P28288 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
ABCD3P28288 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
ABCD3P28288 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
ABCD3P28288 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
ABCD3P28288 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
ABCD3P28288 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
ABCD3P28288 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
ABCD3P28288 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
ABCD3P28288 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC14.71□□□□□ -0.05
ABCD3P28288 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC14.71□□□□□ -0.05
ABCD3P28288 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
ABCD3P28288 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC14.71□□□□□ -0.05
ABCD3P28288 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC14.71□□□□□ -0.05
ABCD3P28288 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC14.71□□□□□ -0.05
ABCD3P28288 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC14.71□□□□□ -0.05
ABCD3P28288 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
ABCD3P28288 EHF-205ENST00000527935 557 ntTSL 2 BASIC14.71□□□□□ -0.05
ABCD3P28288 AC010336.2-201ENST00000564226 506 ntBASIC14.71□□□□□ -0.05
ABCD3P28288 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC14.71□□□□□ -0.05
ABCD3P28288 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC14.71□□□□□ -0.05
ABCD3P28288 AL450472.2-201ENST00000603663 1156 ntBASIC14.71□□□□□ -0.05
ABCD3P28288 AL844908.2-201ENST00000609461 460 ntBASIC14.71□□□□□ -0.05
ABCD3P28288 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
ABCD3P28288 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
ABCD3P28288 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
ABCD3P28288 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
ABCD3P28288 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC14.71□□□□□ -0.05
ABCD3P28288 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC14.71□□□□□ -0.06
ABCD3P28288 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC14.71□□□□□ -0.06
ABCD3P28288 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC14.71□□□□□ -0.06
ABCD3P28288 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.06
ABCD3P28288 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.06
ABCD3P28288 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
ABCD3P28288 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
ABCD3P28288 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
ABCD3P28288 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
ABCD3P28288 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
ABCD3P28288 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC14.7□□□□□ -0.06
ABCD3P28288 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
ABCD3P28288 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
ABCD3P28288 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
ABCD3P28288 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
ABCD3P28288 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
ABCD3P28288 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC14.7□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 78.9 ms