Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RFX1P22670 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RFX1P22670 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC17.41■□□□□ 0.38
RFX1P22670 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC17.41■□□□□ 0.38
RFX1P22670 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
RFX1P22670 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
RFX1P22670 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RFX1P22670 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
RFX1P22670 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC17.4■□□□□ 0.38
RFX1P22670 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
RFX1P22670 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
RFX1P22670 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
RFX1P22670 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC17.4■□□□□ 0.38
RFX1P22670 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC17.4■□□□□ 0.38
RFX1P22670 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC17.4■□□□□ 0.38
RFX1P22670 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC17.4■□□□□ 0.38
RFX1P22670 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC17.4■□□□□ 0.38
RFX1P22670 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RFX1P22670 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
RFX1P22670 PIN1P1-201ENST00000412108 996 ntBASIC17.4■□□□□ 0.38
RFX1P22670 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC17.4■□□□□ 0.38
RFX1P22670 AC142381.1-201ENST00000426099 345 ntBASIC17.4■□□□□ 0.38
RFX1P22670 GPS2P2-201ENST00000430745 888 ntBASIC17.4■□□□□ 0.38
RFX1P22670 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC17.4■□□□□ 0.38
RFX1P22670 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC17.4■□□□□ 0.38
RFX1P22670 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC17.4■□□□□ 0.38
RFX1P22670 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC17.4■□□□□ 0.38
RFX1P22670 AC243562.2-201ENST00000561247 970 ntBASIC17.4■□□□□ 0.38
RFX1P22670 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC17.4■□□□□ 0.38
RFX1P22670 AL138918.1-201ENST00000568306 659 ntBASIC17.4■□□□□ 0.38
RFX1P22670 AC027307.2-201ENST00000591252 911 ntBASIC17.4■□□□□ 0.38
RFX1P22670 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC17.4■□□□□ 0.38
RFX1P22670 AC009118.2-201ENST00000613275 655 ntBASIC17.4■□□□□ 0.38
RFX1P22670 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
RFX1P22670 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RFX1P22670 FOXO1B-201ENST00000504678 1527 ntBASIC17.4■□□□□ 0.38
RFX1P22670 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC17.4■□□□□ 0.38
RFX1P22670 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
RFX1P22670 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC17.4■□□□□ 0.38
RFX1P22670 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
RFX1P22670 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
RFX1P22670 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC17.4■□□□□ 0.38
RFX1P22670 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
RFX1P22670 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.38
RFX1P22670 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
RFX1P22670 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC17.39■□□□□ 0.37
RFX1P22670 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC17.39■□□□□ 0.37
RFX1P22670 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
RFX1P22670 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
RFX1P22670 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RFX1P22670 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC17.39■□□□□ 0.37
RFX1P22670 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RFX1P22670 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
RFX1P22670 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
RFX1P22670 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
RFX1P22670 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RFX1P22670 FAM220BP-201ENST00000377689 816 ntBASIC17.39■□□□□ 0.37
RFX1P22670 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC17.39■□□□□ 0.37
RFX1P22670 PP14571-201ENST00000404327 934 ntTSL 2 BASIC17.39■□□□□ 0.37
RFX1P22670 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC17.39■□□□□ 0.37
RFX1P22670 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
RFX1P22670 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC17.39■□□□□ 0.37
RFX1P22670 RAB34-224ENST00000636513 888 ntTSL 5 BASIC17.39■□□□□ 0.37
RFX1P22670 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
RFX1P22670 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RFX1P22670 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC17.39■□□□□ 0.37
RFX1P22670 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
RFX1P22670 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
RFX1P22670 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
RFX1P22670 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
RFX1P22670 LOX-206ENST00000639739 1626 ntTSL 5 BASIC17.39■□□□□ 0.37
RFX1P22670 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
RFX1P22670 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC17.39■□□□□ 0.37
RFX1P22670 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC17.39■□□□□ 0.37
RFX1P22670 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC17.39■□□□□ 0.37
RFX1P22670 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RFX1P22670 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
RFX1P22670 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RFX1P22670 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RFX1P22670 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RFX1P22670 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC17.38■□□□□ 0.37
RFX1P22670 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RFX1P22670 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RFX1P22670 CICP6-201ENST00000457191 2729 ntBASIC17.38■□□□□ 0.37
RFX1P22670 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RFX1P22670 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
RFX1P22670 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
RFX1P22670 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
RFX1P22670 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC17.38■□□□□ 0.37
RFX1P22670 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RFX1P22670 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
RFX1P22670 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC17.38■□□□□ 0.37
RFX1P22670 AC241585.1-201ENST00000433527 519 ntBASIC17.38■□□□□ 0.37
RFX1P22670 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC17.38■□□□□ 0.37
RFX1P22670 SPDYE14P-201ENST00000442619 822 ntBASIC17.38■□□□□ 0.37
RFX1P22670 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RFX1P22670 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
RFX1P22670 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RFX1P22670 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
RFX1P22670 AC097493.3-201ENST00000509725 367 ntBASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms