Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VCANP13611 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
VCANP13611 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VCANP13611 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
VCANP13611 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC16.16■□□□□ 0.18
VCANP13611 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VCANP13611 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VCANP13611 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
VCANP13611 RAC2-202ENST00000401529 569 ntTSL 4 BASIC16.16■□□□□ 0.18
VCANP13611 HCG27-204ENST00000424675 895 ntTSL 3 BASIC16.16■□□□□ 0.18
VCANP13611 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VCANP13611 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC16.16■□□□□ 0.18
VCANP13611 AC004923.1-202ENST00000642106 209 ntBASIC16.16■□□□□ 0.18
VCANP13611 TK1-203ENST00000588734 1681 ntTSL 2 BASIC16.16■□□□□ 0.18
VCANP13611 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VCANP13611 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
VCANP13611 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VCANP13611 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC16.16■□□□□ 0.18
VCANP13611 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VCANP13611 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC16.16■□□□□ 0.18
VCANP13611 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VCANP13611 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VCANP13611 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VCANP13611 RPL7P35-201ENST00000446943 740 ntBASIC16.16■□□□□ 0.18
VCANP13611 GPX4-206ENST00000588919 803 ntTSL 2 BASIC16.16■□□□□ 0.18
VCANP13611 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VCANP13611 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VCANP13611 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
VCANP13611 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VCANP13611 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
VCANP13611 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC16.16■□□□□ 0.18
VCANP13611 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
VCANP13611 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VCANP13611 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
VCANP13611 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC16.15■□□□□ 0.18
VCANP13611 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
VCANP13611 HLA-DPA2-205ENST00000433582 733 ntBASIC16.15■□□□□ 0.18
VCANP13611 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC16.15■□□□□ 0.18
VCANP13611 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC16.15■□□□□ 0.18
VCANP13611 AL662844.4-201ENST00000606367 2838 ntBASIC16.15■□□□□ 0.18
VCANP13611 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC16.15■□□□□ 0.18
VCANP13611 HLA-A-202ENST00000376806 1854 ntBASIC16.15■□□□□ 0.18
VCANP13611 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
VCANP13611 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VCANP13611 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
VCANP13611 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC16.15■□□□□ 0.18
VCANP13611 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VCANP13611 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
VCANP13611 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC16.15■□□□□ 0.18
VCANP13611 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC16.15■□□□□ 0.18
VCANP13611 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VCANP13611 HNRNPA1P42-201ENST00000458678 957 ntBASIC16.15■□□□□ 0.18
VCANP13611 TMCO5B-205ENST00000530020 894 ntBASIC16.15■□□□□ 0.18
VCANP13611 AC242376.2-201ENST00000619355 883 ntBASIC16.15■□□□□ 0.18
VCANP13611 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC16.15■□□□□ 0.18
VCANP13611 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC16.15■□□□□ 0.18
VCANP13611 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC16.15■□□□□ 0.18
VCANP13611 CAP2P1-201ENST00000557743 1390 ntBASIC16.15■□□□□ 0.18
VCANP13611 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
VCANP13611 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC16.15■□□□□ 0.18
VCANP13611 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
VCANP13611 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
VCANP13611 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VCANP13611 KRT18P64-201ENST00000434946 1219 ntBASIC16.15■□□□□ 0.18
VCANP13611 HIST2H2BB-201ENST00000449108 381 ntBASIC16.15■□□□□ 0.18
VCANP13611 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC16.15■□□□□ 0.18
VCANP13611 HIST2H2BF-204ENST00000545683 999 ntTSL 2 BASIC16.15■□□□□ 0.18
VCANP13611 AC134312.2-201ENST00000563521 608 ntTSL 2 BASIC16.15■□□□□ 0.18
VCANP13611 AC020922.3-201ENST00000595064 547 ntBASIC16.15■□□□□ 0.18
VCANP13611 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VCANP13611 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
VCANP13611 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
VCANP13611 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.18
VCANP13611 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
VCANP13611 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
VCANP13611 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VCANP13611 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
VCANP13611 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
VCANP13611 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
VCANP13611 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VCANP13611 PGGT1BP2-201ENST00000398621 1028 ntBASIC16.14■□□□□ 0.17
VCANP13611 AC073413.1-201ENST00000603927 732 ntBASIC16.14■□□□□ 0.17
VCANP13611 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC16.14■□□□□ 0.17
VCANP13611 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VCANP13611 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VCANP13611 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC16.14■□□□□ 0.17
VCANP13611 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC16.14■□□□□ 0.17
VCANP13611 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VCANP13611 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VCANP13611 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VCANP13611 TMEM176B-201ENST00000326442 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VCANP13611 JPT2-203ENST00000382711 894 ntTSL 4 BASIC16.14■□□□□ 0.17
VCANP13611 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC16.14■□□□□ 0.17
VCANP13611 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
VCANP13611 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VCANP13611 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VCANP13611 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
VCANP13611 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
VCANP13611 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC16.14■□□□□ 0.17
VCANP13611 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms