Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
HLA-DOAP06340 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HLA-DOAP06340 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC18.71■□□□□ 0.59
HLA-DOAP06340 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
HLA-DOAP06340 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC18.71■□□□□ 0.59
HLA-DOAP06340 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC18.71■□□□□ 0.59
HLA-DOAP06340 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HLA-DOAP06340 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HLA-DOAP06340 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HLA-DOAP06340 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HLA-DOAP06340 AC011477.6-201ENST00000604980 1927 ntBASIC18.71■□□□□ 0.59
HLA-DOAP06340 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
HLA-DOAP06340 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HLA-DOAP06340 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HLA-DOAP06340 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
HLA-DOAP06340 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
HLA-DOAP06340 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC18.71■□□□□ 0.59
HLA-DOAP06340 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HLA-DOAP06340 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC18.71■□□□□ 0.59
HLA-DOAP06340 HNRNPA1P13-201ENST00000510646 963 ntBASIC18.71■□□□□ 0.59
HLA-DOAP06340 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC18.71■□□□□ 0.59
HLA-DOAP06340 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC18.71■□□□□ 0.59
HLA-DOAP06340 CU634019.7-201ENST00000624153 1185 ntBASIC18.71■□□□□ 0.59
HLA-DOAP06340 FP236241.2-201ENST00000624906 1185 ntBASIC18.71■□□□□ 0.59
HLA-DOAP06340 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
HLA-DOAP06340 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
HLA-DOAP06340 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC18.71■□□□□ 0.59
HLA-DOAP06340 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC18.71■□□□□ 0.59
HLA-DOAP06340 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
HLA-DOAP06340 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HLA-DOAP06340 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HLA-DOAP06340 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
HLA-DOAP06340 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HLA-DOAP06340 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC18.71■□□□□ 0.59
HLA-DOAP06340 PCDHA12-202ENST00000613593 2588 ntBASIC18.71■□□□□ 0.59
HLA-DOAP06340 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HLA-DOAP06340 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HLA-DOAP06340 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
HLA-DOAP06340 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC18.71■□□□□ 0.58
HLA-DOAP06340 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.58
HLA-DOAP06340 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
HLA-DOAP06340 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
HLA-DOAP06340 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HLA-DOAP06340 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC18.7■□□□□ 0.58
HLA-DOAP06340 PCDHA14-201ENST00000506751 2298 ntBASIC18.7■□□□□ 0.58
HLA-DOAP06340 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
HLA-DOAP06340 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
HLA-DOAP06340 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HLA-DOAP06340 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
HLA-DOAP06340 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HLA-DOAP06340 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC18.7■□□□□ 0.58
HLA-DOAP06340 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HLA-DOAP06340 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
HLA-DOAP06340 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC18.7■□□□□ 0.58
HLA-DOAP06340 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HLA-DOAP06340 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC18.7■□□□□ 0.58
HLA-DOAP06340 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC18.7■□□□□ 0.58
HLA-DOAP06340 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC18.7■□□□□ 0.58
HLA-DOAP06340 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC18.7■□□□□ 0.58
HLA-DOAP06340 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HLA-DOAP06340 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HLA-DOAP06340 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC18.7■□□□□ 0.58
HLA-DOAP06340 AC008735.3-201ENST00000596646 500 ntBASIC18.7■□□□□ 0.58
HLA-DOAP06340 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
HLA-DOAP06340 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HLA-DOAP06340 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HLA-DOAP06340 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HLA-DOAP06340 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
HLA-DOAP06340 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC18.7■□□□□ 0.58
HLA-DOAP06340 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
HLA-DOAP06340 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC18.7■□□□□ 0.58
HLA-DOAP06340 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC18.7■□□□□ 0.58
HLA-DOAP06340 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HLA-DOAP06340 AMT-232ENST00000636199 1546 ntTSL 5 BASIC18.69■□□□□ 0.58
HLA-DOAP06340 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HLA-DOAP06340 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HLA-DOAP06340 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC18.69■□□□□ 0.58
HLA-DOAP06340 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
HLA-DOAP06340 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
HLA-DOAP06340 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC18.69■□□□□ 0.58
HLA-DOAP06340 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
HLA-DOAP06340 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HLA-DOAP06340 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
HLA-DOAP06340 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
HLA-DOAP06340 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HLA-DOAP06340 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC18.69■□□□□ 0.58
HLA-DOAP06340 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
HLA-DOAP06340 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
HLA-DOAP06340 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HLA-DOAP06340 AC134915.1-201ENST00000426461 574 ntBASIC18.69■□□□□ 0.58
HLA-DOAP06340 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC18.69■□□□□ 0.58
HLA-DOAP06340 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC18.69■□□□□ 0.58
HLA-DOAP06340 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC18.69■□□□□ 0.58
HLA-DOAP06340 AC007274.1-201ENST00000439805 662 ntBASIC18.69■□□□□ 0.58
HLA-DOAP06340 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HLA-DOAP06340 AC234783.1-201ENST00000441761 496 ntBASIC18.69■□□□□ 0.58
HLA-DOAP06340 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HLA-DOAP06340 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC18.69■□□□□ 0.58
HLA-DOAP06340 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC18.69■□□□□ 0.58
HLA-DOAP06340 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms