Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
SIX3O95343 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SIX3O95343 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SIX3O95343 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
SIX3O95343 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SIX3O95343 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC15.63■□□□□ 0.09
SIX3O95343 AC006486.2-201ENST00000624246 2199 ntBASIC15.63■□□□□ 0.09
SIX3O95343 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
SIX3O95343 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
SIX3O95343 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC15.63■□□□□ 0.09
SIX3O95343 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
SIX3O95343 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SIX3O95343 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC15.63■□□□□ 0.09
SIX3O95343 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SIX3O95343 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
SIX3O95343 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
SIX3O95343 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC15.63■□□□□ 0.09
SIX3O95343 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SIX3O95343 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SIX3O95343 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SIX3O95343 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC15.63■□□□□ 0.09
SIX3O95343 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SIX3O95343 SPCS2P4-201ENST00000436160 681 ntBASIC15.63■□□□□ 0.09
SIX3O95343 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
SIX3O95343 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC15.63■□□□□ 0.09
SIX3O95343 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC15.63■□□□□ 0.09
SIX3O95343 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC15.63■□□□□ 0.09
SIX3O95343 AL109954.1-202ENST00000564051 2148 ntBASIC15.63■□□□□ 0.09
SIX3O95343 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC15.63■□□□□ 0.09
SIX3O95343 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
SIX3O95343 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC15.63■□□□□ 0.09
SIX3O95343 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC15.63■□□□□ 0.09
SIX3O95343 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SIX3O95343 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC15.63■□□□□ 0.09
SIX3O95343 REXO1L1P-202ENST00000608646 1974 ntBASIC15.63■□□□□ 0.09
SIX3O95343 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SIX3O95343 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SIX3O95343 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SIX3O95343 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC15.63■□□□□ 0.09
SIX3O95343 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
SIX3O95343 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SIX3O95343 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
SIX3O95343 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC15.63■□□□□ 0.09
SIX3O95343 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SIX3O95343 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
SIX3O95343 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SIX3O95343 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SIX3O95343 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC15.62■□□□□ 0.09
SIX3O95343 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC15.62■□□□□ 0.09
SIX3O95343 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
SIX3O95343 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SIX3O95343 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SIX3O95343 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SIX3O95343 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC15.62■□□□□ 0.09
SIX3O95343 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC15.62■□□□□ 0.09
SIX3O95343 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC15.62■□□□□ 0.09
SIX3O95343 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
SIX3O95343 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC15.62■□□□□ 0.09
SIX3O95343 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
SIX3O95343 PP14571-201ENST00000404327 934 ntTSL 2 BASIC15.62■□□□□ 0.09
SIX3O95343 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC15.62■□□□□ 0.09
SIX3O95343 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC15.62■□□□□ 0.09
SIX3O95343 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC15.62■□□□□ 0.09
SIX3O95343 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC15.62■□□□□ 0.09
SIX3O95343 AC079140.1-201ENST00000508039 487 ntBASIC15.62■□□□□ 0.09
SIX3O95343 FAM86C2P-203ENST00000528684 1004 ntBASIC15.62■□□□□ 0.09
SIX3O95343 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC15.62■□□□□ 0.09
SIX3O95343 RNF34-208ENST00000555076 593 ntTSL 3 BASIC15.62■□□□□ 0.09
SIX3O95343 LINC01225-203ENST00000563550 1244 ntBASIC15.62■□□□□ 0.09
SIX3O95343 AP000842.3-202ENST00000569238 1080 ntBASIC15.62■□□□□ 0.09
SIX3O95343 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC15.62■□□□□ 0.09
SIX3O95343 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC15.62■□□□□ 0.09
SIX3O95343 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SIX3O95343 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC15.62■□□□□ 0.09
SIX3O95343 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC15.62■□□□□ 0.09
SIX3O95343 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SIX3O95343 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
SIX3O95343 FLII-221ENST00000578558 2377 ntTSL 5 BASIC15.62■□□□□ 0.09
SIX3O95343 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC15.62■□□□□ 0.09
SIX3O95343 ILF3-AS1-201ENST00000591501 1983 ntBASIC15.62■□□□□ 0.09
SIX3O95343 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
SIX3O95343 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC15.62■□□□□ 0.09
SIX3O95343 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
SIX3O95343 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC15.62■□□□□ 0.09
SIX3O95343 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SIX3O95343 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC15.62■□□□□ 0.09
SIX3O95343 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC15.62■□□□□ 0.09
SIX3O95343 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
SIX3O95343 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SIX3O95343 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
SIX3O95343 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SIX3O95343 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
SIX3O95343 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC15.61■□□□□ 0.09
SIX3O95343 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SIX3O95343 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
SIX3O95343 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC15.61■□□□□ 0.09
SIX3O95343 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
SIX3O95343 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
SIX3O95343 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SIX3O95343 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms