Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.26e-6■■■■■ 103.4
SF3B1O75533 HS6ST1-203ENST00000469019 559 ntTSL 416.29■□□□□ 0.26e-6■■■■■ 103.4
SF3B1O75533 PPOX-209ENST00000479246 963 ntTSL 316.28■□□□□ 0.22e-12■■■■■ 103.4
SF3B1O75533 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC16.24■□□□□ 0.192e-6■■■■■ 103.4
SF3B1O75533 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.196e-6■■■■■ 103.4
SF3B1O75533 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC16.21■□□□□ 0.196e-6■■■■■ 103.4
SF3B1O75533 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.182e-12■■■■■ 103.4
SF3B1O75533 ITPA-206ENST00000461029 378 ntTSL 516.17■□□□□ 0.186e-6■■■■■ 103.4
SF3B1O75533 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC16.13■□□□□ 0.176e-6■■■■■ 103.4
SF3B1O75533 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC16.13■□□□□ 0.176e-6■■■■■ 103.4
SF3B1O75533 SP100-215ENST00000470940 487 ntTSL 216.13■□□□□ 0.176e-6■■■■■ 103.4
SF3B1O75533 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.171e-8■■■■■ 103.4
SF3B1O75533 SLC25A25-206ENST00000445012 713 ntTSL 316.12■□□□□ 0.176e-6■■■■■ 103.4
SF3B1O75533 RNF157-203ENST00000589317 568 ntTSL 216.12■□□□□ 0.171e-8■■■■■ 103.4
SF3B1O75533 HS1BP3-206ENST00000446825 841 ntTSL 316.12■□□□□ 0.176e-6■■■■■ 103.4
SF3B1O75533 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC16.11■□□□□ 0.176e-6■■■■■ 103.4
SF3B1O75533 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.176e-6■■■■■ 103.4
SF3B1O75533 NFE2L1-210ENST00000580037 583 ntTSL 416.08■□□□□ 0.161e-8■■■■■ 103.4
SF3B1O75533 COG2-204ENST00000473671 436 ntTSL 216.04■□□□□ 0.166e-6■■■■■ 103.4
SF3B1O75533 FAM78A-204ENST00000464831 792 ntTSL 216.03■□□□□ 0.161e-8■■■■■ 103.4
SF3B1O75533 PLXNA3-209ENST00000497802 729 ntTSL 216.02■□□□□ 0.162e-12■■■■■ 103.4
SF3B1O75533 RDX-209ENST00000530131 1911 ntTSL 216.02■□□□□ 0.152e-6■■■■■ 103.4
SF3B1O75533 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.156e-6■■■■■ 103.4
SF3B1O75533 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC15.97■□□□□ 0.156e-6■■■■■ 103.4
SF3B1O75533 ACOT9-208ENST00000494361 1682 ntTSL 515.96■□□□□ 0.156e-6■■■■■ 103.4
SF3B1O75533 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.141e-8■■■■■ 103.4
SF3B1O75533 RNF220-218ENST00000497469 590 ntTSL 215.92■□□□□ 0.141e-8■■■■■ 103.4
SF3B1O75533 NCKIPSD-205ENST00000426678 897 ntTSL 515.92■□□□□ 0.141e-8■■■■■ 103.4
SF3B1O75533 PPOX-217ENST00000539753 816 ntTSL 515.92■□□□□ 0.142e-12■■■■■ 103.4
SF3B1O75533 FAM126B-203ENST00000446678 522 ntTSL 315.82■□□□□ 0.126e-6■■■■■ 103.4
SF3B1O75533 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC15.8■□□□□ 0.126e-6■■■■■ 103.4
SF3B1O75533 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC15.8■□□□□ 0.126e-6■■■■■ 103.4
SF3B1O75533 NCKIPSD-207ENST00000453349 889 ntTSL 315.78■□□□□ 0.121e-8■■■■■ 103.4
SF3B1O75533 TOE1-203ENST00000471337 1074 ntTSL 315.76■□□□□ 0.116e-6■■■■■ 103.4
SF3B1O75533 FBXL18-202ENST00000415009 2526 ntTSL 215.74■□□□□ 0.111e-8■■■■■ 103.4
SF3B1O75533 DLG5-210ENST00000489547 861 ntTSL 315.73■□□□□ 0.116e-6■■■■■ 103.4
SF3B1O75533 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.12e-12■■■■■ 103.4
SF3B1O75533 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC15.69■□□□□ 0.11e-8■■■■■ 103.4
SF3B1O75533 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.16e-6■■■■■ 103.4
SF3B1O75533 AXIN1-204ENST00000461023 6340 ntTSL 215.67■□□□□ 0.16e-6■■■■■ 103.4
SF3B1O75533 KDM5C-206ENST00000428012 766 ntTSL 315.66■□□□□ 0.12e-6■■■■■ 103.4
SF3B1O75533 DHODH-203ENST00000571392 2165 ntTSL 515.65■□□□□ 0.12e-12■■■■■ 103.4
SF3B1O75533 EXOC3-206ENST00000510028 1242 ntTSL 315.59■□□□□ 0.091e-8■■■■■ 103.4
SF3B1O75533 PRR5-ARHGAP8-204ENST00000515632 1590 ntTSL 215.58■□□□□ 0.086e-6■■■■■ 103.4
SF3B1O75533 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.081e-8■■■■■ 103.4
SF3B1O75533 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.082e-6■■■■■ 103.4
SF3B1O75533 SEC14L1-218ENST00000588488 705 ntTSL 515.51■□□□□ 0.072e-12■■■■■ 103.4
SF3B1O75533 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.071e-8■■■■■ 103.4
SF3B1O75533 GORASP1-211ENST00000441302 3240 ntTSL 215.44■□□□□ 0.066e-6■■■■■ 103.4
SF3B1O75533 EXOSC7-210ENST00000491476 1395 ntTSL 515.43■□□□□ 0.061e-6■■■■■ 103.4
SF3B1O75533 CCND1-204ENST00000539241 920 ntTSL 215.43■□□□□ 0.066e-6■■■■■ 103.4
SF3B1O75533 STK11IP-203ENST00000456857 578 ntTSL 515.41■□□□□ 0.061e-8■■■■■ 103.4
SF3B1O75533 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.066e-6■■■■■ 103.4
SF3B1O75533 RECQL5-207ENST00000578865 1176 ntTSL 1 (best)15.4■□□□□ 0.061e-8■■■■■ 103.4
SF3B1O75533 U2AF1-210ENST00000478282 3344 ntTSL 215.38■□□□□ 0.056e-6■■■■■ 103.4
SF3B1O75533 CDC27-205ENST00000528147 463 ntTSL 415.38■□□□□ 0.056e-6■■■■■ 103.4
SF3B1O75533 STK11IP-210ENST00000475396 2251 ntTSL 215.35■□□□□ 0.051e-8■■■■■ 103.4
SF3B1O75533 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC15.34■□□□□ 0.053e-6■■■■■ 103.4
SF3B1O75533 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC15.33■□□□□ 0.046e-6■■■■■ 103.4
SF3B1O75533 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.046e-6■■■■■ 103.4
SF3B1O75533 PHF8-212ENST00000445025 475 ntTSL 415.31■□□□□ 0.042e-12■■■■■ 103.4
SF3B1O75533 NKIRAS2-211ENST00000491638 1041 ntTSL 215.29■□□□□ 0.041e-8■■■■■ 103.4
SF3B1O75533 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC15.26■□□□□ 0.036e-6■■■■■ 103.4
SF3B1O75533 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.031e-8■■■■■ 103.4
SF3B1O75533 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.031e-8■■■■■ 103.4
SF3B1O75533 COPS5-204ENST00000517793 657 ntTSL 515.22■□□□□ 0.031e-8■■■■■ 103.4
SF3B1O75533 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.033e-6■■■■■ 103.4
SF3B1O75533 ETFDH-207ENST00000512251 446 ntTSL 415.21■□□□□ 0.036e-6■■■■■ 103.4
SF3B1O75533 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.022e-6■■■■■ 103.4
SF3B1O75533 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.026e-6■■■■■ 103.4
SF3B1O75533 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.026e-6■■■■■ 103.4
SF3B1O75533 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC15.14■□□□□ 0.016e-6■■■■■ 103.4
SF3B1O75533 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC15.14■□□□□ 0.016e-6■■■■■ 103.4
SF3B1O75533 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC15.13■□□□□ 0.011e-8■■■■■ 103.4
SF3B1O75533 PRR5-ARHGAP8-203ENST00000495250 1271 ntTSL 215.12■□□□□ 0.016e-6■■■■■ 103.4
SF3B1O75533 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC15.11■□□□□ 0.016e-6■■■■■ 103.4
SF3B1O75533 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC15.06■□□□□ 06e-6■■■■■ 103.4
SF3B1O75533 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 06e-6■■■■■ 103.4
SF3B1O75533 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -06e-6■■■■■ 103.4
SF3B1O75533 THRB-207ENST00000418247 592 ntTSL 215.03■□□□□ -09e-9■■■■■ 103.4
SF3B1O75533 NT5DC2-214ENST00000490681 560 ntTSL 415.02■□□□□ -06e-6■■■■■ 103.4
SF3B1O75533 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC14.99□□□□□ -0.012e-6■■■■■ 103.4
SF3B1O75533 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC14.99□□□□□ -0.016e-6■■■■■ 103.4
SF3B1O75533 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC14.98□□□□□ -0.012e-12■■■■■ 103.4
SF3B1O75533 RIC8A-204ENST00000526557 670 ntTSL 214.97□□□□□ -0.011e-8■■■■■ 103.4
SF3B1O75533 PLCG1-212ENST00000492148 597 ntTSL 214.93□□□□□ -0.022e-12■■■■■ 103.4
SF3B1O75533 POMGNT1-206ENST00000477114 770 ntTSL 314.92□□□□□ -0.021e-8■■■■■ 103.4
SF3B1O75533 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC14.92□□□□□ -0.026e-6■■■■■ 103.4
SF3B1O75533 EXOSC7-203ENST00000461361 1593 ntTSL 214.89□□□□□ -0.031e-6■■■■■ 103.4
SF3B1O75533 WDR82-202ENST00000463624 574 ntTSL 414.86□□□□□ -0.036e-6■■■■■ 103.4
SF3B1O75533 TACC1-222ENST00000522752 944 ntTSL 1 (best)14.85□□□□□ -0.031e-8■■■■■ 103.4
SF3B1O75533 RDX-218ENST00000544551 4117 ntTSL 2 BASIC14.83□□□□□ -0.042e-6■■■■■ 103.4
SF3B1O75533 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.046e-6■■■■■ 103.4
SF3B1O75533 PDCD6-204ENST00000506909 458 ntTSL 314.78□□□□□ -0.042e-6■■■■■ 103.4
SF3B1O75533 C7orf49-214ENST00000620897 1349 ntTSL 3 BASIC14.73□□□□□ -0.056e-6■■■■■ 103.4
SF3B1O75533 PPOX-204ENST00000462866 473 ntTSL 5 BASIC14.7□□□□□ -0.062e-12■■■■■ 103.4
SF3B1O75533 NAA60-205ENST00000424546 1149 ntTSL 2 BASIC14.69□□□□□ -0.066e-6■■■■■ 103.4
SF3B1O75533 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.066e-6■■■■■ 103.4
SF3B1O75533 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.062e-7■■■■■ 103.4
SF3B1O75533 RMDN3-204ENST00000558232 1033 ntTSL 514.65□□□□□ -0.061e-8■■■■■ 103.4
Retrieved 100 of 46,956 protein–RNA pairs in 1897.7 ms