Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HMGB3O15347 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC12.93□□□□□ -0.34
HMGB3O15347 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC12.93□□□□□ -0.34
HMGB3O15347 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC12.93□□□□□ -0.34
HMGB3O15347 AL353801.3-201ENST00000609898 542 ntBASIC12.93□□□□□ -0.34
HMGB3O15347 SOAT1-204ENST00000540564 6861 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HMGB3O15347 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
HMGB3O15347 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HMGB3O15347 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
HMGB3O15347 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HMGB3O15347 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
HMGB3O15347 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HMGB3O15347 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HMGB3O15347 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HMGB3O15347 MECR-202ENST00000373791 2416 ntTSL 2 BASIC12.93□□□□□ -0.34
HMGB3O15347 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC12.93□□□□□ -0.34
HMGB3O15347 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC12.93□□□□□ -0.34
HMGB3O15347 PIK3CD-202ENST00000377346 5203 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HMGB3O15347 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HMGB3O15347 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HMGB3O15347 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC12.93□□□□□ -0.34
HMGB3O15347 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HMGB3O15347 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HMGB3O15347 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
HMGB3O15347 API5-202ENST00000420461 2009 ntTSL 2 BASIC12.93□□□□□ -0.34
HMGB3O15347 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC12.93□□□□□ -0.34
HMGB3O15347 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
HMGB3O15347 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC12.93□□□□□ -0.34
HMGB3O15347 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC12.93□□□□□ -0.34
HMGB3O15347 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HMGB3O15347 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC12.93□□□□□ -0.34
HMGB3O15347 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
HMGB3O15347 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC12.92□□□□□ -0.34
HMGB3O15347 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC12.92□□□□□ -0.34
HMGB3O15347 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC12.92□□□□□ -0.34
HMGB3O15347 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC12.92□□□□□ -0.34
HMGB3O15347 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC12.92□□□□□ -0.34
HMGB3O15347 PPP1R26P4-201ENST00000619065 3527 ntBASIC12.92□□□□□ -0.34
HMGB3O15347 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HMGB3O15347 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HMGB3O15347 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
HMGB3O15347 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC12.92□□□□□ -0.34
HMGB3O15347 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
HMGB3O15347 GPAA1P2-202ENST00000606848 1787 ntBASIC12.92□□□□□ -0.34
HMGB3O15347 UCKL1-AS1-201ENST00000623569 3602 ntBASIC12.92□□□□□ -0.34
HMGB3O15347 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
HMGB3O15347 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HMGB3O15347 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HMGB3O15347 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HMGB3O15347 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HMGB3O15347 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
HMGB3O15347 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HMGB3O15347 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HMGB3O15347 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
HMGB3O15347 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HMGB3O15347 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
HMGB3O15347 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HMGB3O15347 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HMGB3O15347 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
HMGB3O15347 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
HMGB3O15347 KRT8P39-201ENST00000396270 1433 ntBASIC12.92□□□□□ -0.34
HMGB3O15347 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HMGB3O15347 AL020989.1-201ENST00000422979 469 ntBASIC12.92□□□□□ -0.34
HMGB3O15347 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC12.92□□□□□ -0.34
HMGB3O15347 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC12.92□□□□□ -0.34
HMGB3O15347 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC12.92□□□□□ -0.34
HMGB3O15347 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC12.92□□□□□ -0.34
HMGB3O15347 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC12.92□□□□□ -0.34
HMGB3O15347 TERC-201ENST00000602385 541 ntBASIC12.92□□□□□ -0.34
HMGB3O15347 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC12.92□□□□□ -0.34
HMGB3O15347 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HMGB3O15347 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
HMGB3O15347 AC104581.4-201ENST00000623126 3052 ntBASIC12.92□□□□□ -0.34
HMGB3O15347 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
HMGB3O15347 DFFB-212ENST00000625756 649 ntTSL 5 BASIC12.92□□□□□ -0.34
HMGB3O15347 LINC01144-201ENST00000626198 1710 ntBASIC12.92□□□□□ -0.34
HMGB3O15347 KIF21B-204ENST00000461742 5428 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HMGB3O15347 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC12.92□□□□□ -0.34
HMGB3O15347 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC12.92□□□□□ -0.34
HMGB3O15347 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
HMGB3O15347 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HMGB3O15347 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC12.92□□□□□ -0.34
HMGB3O15347 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HMGB3O15347 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
HMGB3O15347 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HMGB3O15347 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC12.92□□□□□ -0.34
HMGB3O15347 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
HMGB3O15347 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HMGB3O15347 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
HMGB3O15347 FAM193A-201ENST00000324666 4846 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
HMGB3O15347 EPHA5-201ENST00000273854 8266 ntAPPRIS P4 TSL 1 (best) BASIC12.92□□□□□ -0.34
HMGB3O15347 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HMGB3O15347 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
HMGB3O15347 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
HMGB3O15347 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
HMGB3O15347 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC12.92□□□□□ -0.34
HMGB3O15347 AC016582.3-202ENST00000443870 6580 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
HMGB3O15347 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
HMGB3O15347 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC12.91□□□□□ -0.34
HMGB3O15347 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms