Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
CTDP1Q9Y5B0 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
CTDP1Q9Y5B0 TK2-202ENST00000417693 1046 ntTSL 2 BASIC27.19■■□□□ 1.94
CTDP1Q9Y5B0 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC27.19■■□□□ 1.94
CTDP1Q9Y5B0 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
CTDP1Q9Y5B0 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
CTDP1Q9Y5B0 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC27.19■■□□□ 1.94
CTDP1Q9Y5B0 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC27.18■■□□□ 1.94
CTDP1Q9Y5B0 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
CTDP1Q9Y5B0 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
CTDP1Q9Y5B0 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC27.18■■□□□ 1.94
CTDP1Q9Y5B0 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC27.18■■□□□ 1.94
CTDP1Q9Y5B0 AC096887.2-201ENST00000623443 1957 ntBASIC27.18■■□□□ 1.94
CTDP1Q9Y5B0 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
CTDP1Q9Y5B0 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC27.18■■□□□ 1.94
CTDP1Q9Y5B0 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC27.17■■□□□ 1.94
CTDP1Q9Y5B0 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
CTDP1Q9Y5B0 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC27.17■■□□□ 1.94
CTDP1Q9Y5B0 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
CTDP1Q9Y5B0 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC27.17■■□□□ 1.94
CTDP1Q9Y5B0 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC27.17■■□□□ 1.94
CTDP1Q9Y5B0 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
CTDP1Q9Y5B0 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC27.17■■□□□ 1.94
CTDP1Q9Y5B0 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC27.16■■□□□ 1.94
CTDP1Q9Y5B0 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
CTDP1Q9Y5B0 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC27.16■■□□□ 1.94
CTDP1Q9Y5B0 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
CTDP1Q9Y5B0 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
CTDP1Q9Y5B0 AC010501.1-201ENST00000606270 1962 ntBASIC27.15■■□□□ 1.94
CTDP1Q9Y5B0 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
CTDP1Q9Y5B0 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC27.15■■□□□ 1.94
CTDP1Q9Y5B0 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
CTDP1Q9Y5B0 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
CTDP1Q9Y5B0 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
CTDP1Q9Y5B0 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC27.14■■□□□ 1.94
CTDP1Q9Y5B0 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC27.14■■□□□ 1.94
CTDP1Q9Y5B0 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC27.14■■□□□ 1.94
CTDP1Q9Y5B0 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC27.14■■□□□ 1.94
CTDP1Q9Y5B0 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC27.14■■□□□ 1.94
CTDP1Q9Y5B0 AC090877.2-201ENST00000558441 1738 ntBASIC27.13■■□□□ 1.93
CTDP1Q9Y5B0 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
CTDP1Q9Y5B0 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
CTDP1Q9Y5B0 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC27.13■■□□□ 1.93
CTDP1Q9Y5B0 SENP5-202ENST00000419026 973 ntTSL 3 BASIC27.13■■□□□ 1.93
CTDP1Q9Y5B0 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC27.13■■□□□ 1.93
CTDP1Q9Y5B0 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC27.13■■□□□ 1.93
CTDP1Q9Y5B0 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC27.13■■□□□ 1.93
CTDP1Q9Y5B0 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC27.12■■□□□ 1.93
CTDP1Q9Y5B0 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC27.12■■□□□ 1.93
CTDP1Q9Y5B0 PEMT-206ENST00000435340 960 ntTSL 5 BASIC27.12■■□□□ 1.93
CTDP1Q9Y5B0 SRR-208ENST00000576848 588 ntTSL 4 BASIC27.12■■□□□ 1.93
CTDP1Q9Y5B0 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC27.12■■□□□ 1.93
CTDP1Q9Y5B0 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
CTDP1Q9Y5B0 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
CTDP1Q9Y5B0 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC27.12■■□□□ 1.93
CTDP1Q9Y5B0 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC27.12■■□□□ 1.93
CTDP1Q9Y5B0 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC27.12■■□□□ 1.93
CTDP1Q9Y5B0 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
CTDP1Q9Y5B0 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC27.11■■□□□ 1.93
CTDP1Q9Y5B0 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC27.11■■□□□ 1.93
CTDP1Q9Y5B0 TRIR-202ENST00000588213 841 ntTSL 3 BASIC27.11■■□□□ 1.93
CTDP1Q9Y5B0 MIR6724-1-201ENST00000616420 92 ntBASIC27.11■■□□□ 1.93
CTDP1Q9Y5B0 MIR6724-2-201ENST00000616483 92 ntBASIC27.11■■□□□ 1.93
CTDP1Q9Y5B0 MIR6724-4-201ENST00000617390 92 ntBASIC27.11■■□□□ 1.93
CTDP1Q9Y5B0 MIR6724-3-201ENST00000622482 92 ntBASIC27.11■■□□□ 1.93
CTDP1Q9Y5B0 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC27.11■■□□□ 1.93
CTDP1Q9Y5B0 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC27.11■■□□□ 1.93
CTDP1Q9Y5B0 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
CTDP1Q9Y5B0 AL121749.1-202ENST00000609313 2153 ntBASIC27.1■■□□□ 1.93
CTDP1Q9Y5B0 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC27.1■■□□□ 1.93
CTDP1Q9Y5B0 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC27.1■■□□□ 1.93
CTDP1Q9Y5B0 CLTA-210ENST00000540080 989 ntTSL 2 BASIC27.1■■□□□ 1.93
CTDP1Q9Y5B0 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
CTDP1Q9Y5B0 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC27.09■■□□□ 1.93
CTDP1Q9Y5B0 AC092803.2-201ENST00000564287 1899 ntBASIC27.09■■□□□ 1.93
CTDP1Q9Y5B0 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
CTDP1Q9Y5B0 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC27.09■■□□□ 1.93
CTDP1Q9Y5B0 AF131216.4-201ENST00000638924 1588 ntBASIC27.09■■□□□ 1.93
CTDP1Q9Y5B0 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC27.08■■□□□ 1.93
CTDP1Q9Y5B0 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
CTDP1Q9Y5B0 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
CTDP1Q9Y5B0 AC019069.1-201ENST00000610008 1333 ntBASIC27.08■■□□□ 1.93
CTDP1Q9Y5B0 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC27.07■■□□□ 1.92
CTDP1Q9Y5B0 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
CTDP1Q9Y5B0 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
CTDP1Q9Y5B0 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC27.07■■□□□ 1.92
CTDP1Q9Y5B0 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC27.07■■□□□ 1.92
CTDP1Q9Y5B0 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC27.07■■□□□ 1.92
CTDP1Q9Y5B0 AL356740.2-201ENST00000601559 647 ntBASIC27.07■■□□□ 1.92
CTDP1Q9Y5B0 EXOG-217ENST00000630638 197 ntTSL 5 BASIC27.07■■□□□ 1.92
CTDP1Q9Y5B0 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
CTDP1Q9Y5B0 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC27.07■■□□□ 1.92
CTDP1Q9Y5B0 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC27.07■■□□□ 1.92
CTDP1Q9Y5B0 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC27.07■■□□□ 1.92
CTDP1Q9Y5B0 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
CTDP1Q9Y5B0 RPP21-222ENST00000433076 577 ntTSL 2 BASIC27.06■■□□□ 1.92
CTDP1Q9Y5B0 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC27.06■■□□□ 1.92
CTDP1Q9Y5B0 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
CTDP1Q9Y5B0 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
CTDP1Q9Y5B0 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
Retrieved 100 of 98,524 protein–RNA pairs in 13.8 ms