Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC20.63■□□□□ 0.89
LIME1Q9H400 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIME1Q9H400 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIME1Q9H400 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
LIME1Q9H400 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
LIME1Q9H400 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC20.62■□□□□ 0.89
LIME1Q9H400 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC20.62■□□□□ 0.89
LIME1Q9H400 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
LIME1Q9H400 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC20.62■□□□□ 0.89
LIME1Q9H400 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC20.62■□□□□ 0.89
LIME1Q9H400 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC20.62■□□□□ 0.89
LIME1Q9H400 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC20.62■□□□□ 0.89
LIME1Q9H400 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
LIME1Q9H400 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
LIME1Q9H400 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LIME1Q9H400 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC20.61■□□□□ 0.89
LIME1Q9H400 AC120024.1-201ENST00000562672 995 ntBASIC20.61■□□□□ 0.89
LIME1Q9H400 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC20.61■□□□□ 0.89
LIME1Q9H400 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LIME1Q9H400 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
LIME1Q9H400 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
LIME1Q9H400 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LIME1Q9H400 AL136116.3-201ENST00000402907 1138 ntBASIC20.6■□□□□ 0.89
LIME1Q9H400 RPP21-222ENST00000433076 577 ntTSL 2 BASIC20.6■□□□□ 0.89
LIME1Q9H400 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC20.6■□□□□ 0.89
LIME1Q9H400 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
LIME1Q9H400 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LIME1Q9H400 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LIME1Q9H400 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LIME1Q9H400 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LIME1Q9H400 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
LIME1Q9H400 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC20.59■□□□□ 0.89
LIME1Q9H400 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
LIME1Q9H400 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC20.59■□□□□ 0.89
LIME1Q9H400 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LIME1Q9H400 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
LIME1Q9H400 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
LIME1Q9H400 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
LIME1Q9H400 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.58■□□□□ 0.89
LIME1Q9H400 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LIME1Q9H400 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LIME1Q9H400 AC092028.1-203ENST00000608262 953 ntBASIC20.58■□□□□ 0.89
LIME1Q9H400 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
LIME1Q9H400 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
LIME1Q9H400 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC20.58■□□□□ 0.88
LIME1Q9H400 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC20.58■□□□□ 0.88
LIME1Q9H400 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIME1Q9H400 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LIME1Q9H400 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIME1Q9H400 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC20.57■□□□□ 0.88
LIME1Q9H400 AC110285.6-201ENST00000617652 491 ntBASIC20.57■□□□□ 0.88
LIME1Q9H400 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC20.57■□□□□ 0.88
LIME1Q9H400 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIME1Q9H400 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIME1Q9H400 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LIME1Q9H400 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
LIME1Q9H400 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIME1Q9H400 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LIME1Q9H400 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LIME1Q9H400 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.56■□□□□ 0.88
LIME1Q9H400 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC20.56■□□□□ 0.88
LIME1Q9H400 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC20.56■□□□□ 0.88
LIME1Q9H400 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
LIME1Q9H400 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
LIME1Q9H400 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LIME1Q9H400 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LIME1Q9H400 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LIME1Q9H400 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC20.55■□□□□ 0.88
LIME1Q9H400 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LIME1Q9H400 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LIME1Q9H400 AC142472.1-201ENST00000612013 1741 ntBASIC20.54■□□□□ 0.88
LIME1Q9H400 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LIME1Q9H400 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC20.54■□□□□ 0.88
LIME1Q9H400 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
LIME1Q9H400 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC20.54■□□□□ 0.88
LIME1Q9H400 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIME1Q9H400 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIME1Q9H400 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LIME1Q9H400 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
LIME1Q9H400 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC20.53■□□□□ 0.88
LIME1Q9H400 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIME1Q9H400 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LIME1Q9H400 CEBPA-AS1-201ENST00000592982 2198 ntBASIC20.53■□□□□ 0.88
LIME1Q9H400 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
LIME1Q9H400 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LIME1Q9H400 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC20.53■□□□□ 0.88
LIME1Q9H400 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.88
LIME1Q9H400 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
LIME1Q9H400 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LIME1Q9H400 KRT18P10-201ENST00000388836 1287 ntBASIC20.52■□□□□ 0.88
LIME1Q9H400 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC20.52■□□□□ 0.88
LIME1Q9H400 AC005837.3-201ENST00000612163 286 ntBASIC20.52■□□□□ 0.88
LIME1Q9H400 AL117332.1-201ENST00000622628 974 ntBASIC20.52■□□□□ 0.88
LIME1Q9H400 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LIME1Q9H400 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
LIME1Q9H400 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
LIME1Q9H400 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
LIME1Q9H400 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LIME1Q9H400 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LIME1Q9H400 AC096631.2-201ENST00000436136 790 ntBASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms