Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
CDX2Q99626 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
CDX2Q99626 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
CDX2Q99626 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC25.17■■□□□ 1.62
CDX2Q99626 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC25.17■■□□□ 1.62
CDX2Q99626 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC25.17■■□□□ 1.62
CDX2Q99626 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC25.17■■□□□ 1.62
CDX2Q99626 AC008764.7-201ENST00000593779 1081 ntBASIC25.17■■□□□ 1.62
CDX2Q99626 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC25.17■■□□□ 1.62
CDX2Q99626 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
CDX2Q99626 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC25.17■■□□□ 1.62
CDX2Q99626 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC25.16■■□□□ 1.62
CDX2Q99626 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC25.16■■□□□ 1.62
CDX2Q99626 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CDX2Q99626 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC25.16■■□□□ 1.62
CDX2Q99626 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC25.16■■□□□ 1.62
CDX2Q99626 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC25.15■■□□□ 1.62
CDX2Q99626 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC25.15■■□□□ 1.62
CDX2Q99626 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC25.15■■□□□ 1.62
CDX2Q99626 AL139393.2-201ENST00000608721 2025 ntBASIC25.14■■□□□ 1.62
CDX2Q99626 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC25.14■■□□□ 1.62
CDX2Q99626 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
CDX2Q99626 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC25.14■■□□□ 1.62
CDX2Q99626 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC25.14■■□□□ 1.62
CDX2Q99626 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
CDX2Q99626 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
CDX2Q99626 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
CDX2Q99626 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC25.13■■□□□ 1.61
CDX2Q99626 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC25.13■■□□□ 1.61
CDX2Q99626 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC25.13■■□□□ 1.61
CDX2Q99626 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
CDX2Q99626 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC25.13■■□□□ 1.61
CDX2Q99626 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC25.13■■□□□ 1.61
CDX2Q99626 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
CDX2Q99626 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CDX2Q99626 HLA-L-209ENST00000420110 1011 ntBASIC25.12■■□□□ 1.61
CDX2Q99626 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC25.12■■□□□ 1.61
CDX2Q99626 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CDX2Q99626 AC099791.1-201ENST00000416440 715 ntBASIC25.11■■□□□ 1.61
CDX2Q99626 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC25.11■■□□□ 1.61
CDX2Q99626 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC25.11■■□□□ 1.61
CDX2Q99626 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC25.11■■□□□ 1.61
CDX2Q99626 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC25.11■■□□□ 1.61
CDX2Q99626 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC25.11■■□□□ 1.61
CDX2Q99626 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC25.11■■□□□ 1.61
CDX2Q99626 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC25.11■■□□□ 1.61
CDX2Q99626 AK1-201ENST00000223836 736 ntTSL 3 BASIC25.1■■□□□ 1.61
CDX2Q99626 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC25.1■■□□□ 1.61
CDX2Q99626 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC25.1■■□□□ 1.61
CDX2Q99626 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
CDX2Q99626 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC25.1■■□□□ 1.61
CDX2Q99626 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC25.1■■□□□ 1.61
CDX2Q99626 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC25.1■■□□□ 1.61
CDX2Q99626 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
CDX2Q99626 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
CDX2Q99626 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
CDX2Q99626 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC25.09■■□□□ 1.61
CDX2Q99626 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
CDX2Q99626 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
CDX2Q99626 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC25.08■■□□□ 1.61
CDX2Q99626 SERBP1P1-201ENST00000396021 1160 ntBASIC25.08■■□□□ 1.61
CDX2Q99626 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC25.08■■□□□ 1.61
CDX2Q99626 SSSCA1-AS1-201ENST00000567594 614 ntBASIC25.08■■□□□ 1.61
CDX2Q99626 AC092171.4-201ENST00000609130 632 ntBASIC25.08■■□□□ 1.61
CDX2Q99626 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC25.08■■□□□ 1.6
CDX2Q99626 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
CDX2Q99626 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
CDX2Q99626 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC25.07■■□□□ 1.6
CDX2Q99626 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC25.07■■□□□ 1.6
CDX2Q99626 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC25.07■■□□□ 1.6
CDX2Q99626 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC25.06■■□□□ 1.6
CDX2Q99626 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
CDX2Q99626 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC25.06■■□□□ 1.6
CDX2Q99626 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC25.06■■□□□ 1.6
CDX2Q99626 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC25.06■■□□□ 1.6
CDX2Q99626 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
CDX2Q99626 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC25.05■■□□□ 1.6
CDX2Q99626 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC25.05■■□□□ 1.6
CDX2Q99626 VPS53-216ENST00000574029 585 ntTSL 4 BASIC25.05■■□□□ 1.6
CDX2Q99626 AL031602.1-201ENST00000633169 911 ntBASIC25.05■■□□□ 1.6
CDX2Q99626 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC25.05■■□□□ 1.6
CDX2Q99626 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CDX2Q99626 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC25.04■■□□□ 1.6
CDX2Q99626 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CDX2Q99626 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
CDX2Q99626 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC25.04■■□□□ 1.6
CDX2Q99626 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
CDX2Q99626 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC25.04■■□□□ 1.6
CDX2Q99626 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CDX2Q99626 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC25.03■■□□□ 1.6
CDX2Q99626 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC25.03■■□□□ 1.6
CDX2Q99626 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CDX2Q99626 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CDX2Q99626 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC25.03■■□□□ 1.6
CDX2Q99626 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC25.03■■□□□ 1.6
CDX2Q99626 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC25.03■■□□□ 1.6
CDX2Q99626 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CDX2Q99626 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CDX2Q99626 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CDX2Q99626 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC25.02■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms