Protein–RNA interactions for Protein: Q96S90

LYSMD1, LysM and putative peptidoglycan-binding domain-containing protein 1, humanhuman

Predictions only

Length 227 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD1Q96S90 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
LYSMD1Q96S90 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC23.51■■□□□ 1.35
LYSMD1Q96S90 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
LYSMD1Q96S90 AC022211.4-201ENST00000625094 2161 ntBASIC23.51■■□□□ 1.35
LYSMD1Q96S90 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
LYSMD1Q96S90 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC23.5■■□□□ 1.35
LYSMD1Q96S90 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC23.5■■□□□ 1.35
LYSMD1Q96S90 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
LYSMD1Q96S90 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC23.5■■□□□ 1.35
LYSMD1Q96S90 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC23.5■■□□□ 1.35
LYSMD1Q96S90 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC23.49■■□□□ 1.35
LYSMD1Q96S90 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
LYSMD1Q96S90 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
LYSMD1Q96S90 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
LYSMD1Q96S90 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
LYSMD1Q96S90 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC23.49■■□□□ 1.35
LYSMD1Q96S90 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
LYSMD1Q96S90 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC23.49■■□□□ 1.35
LYSMD1Q96S90 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
LYSMD1Q96S90 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC23.49■■□□□ 1.35
LYSMD1Q96S90 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
LYSMD1Q96S90 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
LYSMD1Q96S90 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
LYSMD1Q96S90 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
LYSMD1Q96S90 THA1P-201ENST00000590384 1145 ntBASIC23.48■■□□□ 1.35
LYSMD1Q96S90 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC23.48■■□□□ 1.35
LYSMD1Q96S90 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC23.47■■□□□ 1.35
LYSMD1Q96S90 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC23.47■■□□□ 1.35
LYSMD1Q96S90 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
LYSMD1Q96S90 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
LYSMD1Q96S90 AL031848.2-201ENST00000607670 837 ntBASIC23.47■■□□□ 1.35
LYSMD1Q96S90 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
LYSMD1Q96S90 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
LYSMD1Q96S90 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC23.46■■□□□ 1.35
LYSMD1Q96S90 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC23.46■■□□□ 1.35
LYSMD1Q96S90 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
LYSMD1Q96S90 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
LYSMD1Q96S90 AC142381.3-201ENST00000568208 1670 ntBASIC23.46■■□□□ 1.35
LYSMD1Q96S90 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
LYSMD1Q96S90 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
LYSMD1Q96S90 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC23.45■■□□□ 1.34
LYSMD1Q96S90 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC23.45■■□□□ 1.34
LYSMD1Q96S90 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC23.45■■□□□ 1.34
LYSMD1Q96S90 TK2-216ENST00000564917 1156 ntTSL 3 BASIC23.45■■□□□ 1.34
LYSMD1Q96S90 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
LYSMD1Q96S90 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
LYSMD1Q96S90 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC23.44■■□□□ 1.34
LYSMD1Q96S90 GAK-223ENST00000628912 497 ntTSL 5 BASIC23.44■■□□□ 1.34
LYSMD1Q96S90 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC23.44■■□□□ 1.34
LYSMD1Q96S90 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
LYSMD1Q96S90 LSR-205ENST00000427250 1606 ntTSL 2 BASIC23.44■■□□□ 1.34
LYSMD1Q96S90 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
LYSMD1Q96S90 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
LYSMD1Q96S90 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
LYSMD1Q96S90 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC23.43■■□□□ 1.34
LYSMD1Q96S90 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
LYSMD1Q96S90 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
LYSMD1Q96S90 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC23.42■■□□□ 1.34
LYSMD1Q96S90 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC23.42■■□□□ 1.34
LYSMD1Q96S90 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC23.42■■□□□ 1.34
LYSMD1Q96S90 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
LYSMD1Q96S90 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
LYSMD1Q96S90 PRTG-204ENST00000561292 833 ntTSL 3 BASIC23.41■■□□□ 1.34
LYSMD1Q96S90 MIR4281-201ENST00000580852 62 ntBASIC23.41■■□□□ 1.34
LYSMD1Q96S90 AL451085.2-201ENST00000605085 799 ntBASIC23.41■■□□□ 1.34
LYSMD1Q96S90 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
LYSMD1Q96S90 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC23.41■■□□□ 1.34
LYSMD1Q96S90 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
LYSMD1Q96S90 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC23.4■■□□□ 1.34
LYSMD1Q96S90 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
LYSMD1Q96S90 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC23.4■■□□□ 1.34
LYSMD1Q96S90 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
LYSMD1Q96S90 AP003733.4-201ENST00000623785 1697 ntBASIC23.4■■□□□ 1.34
LYSMD1Q96S90 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC23.4■■□□□ 1.34
LYSMD1Q96S90 MED17-227ENST00000640521 2047 ntTSL 5 BASIC23.4■■□□□ 1.34
LYSMD1Q96S90 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC23.39■■□□□ 1.34
LYSMD1Q96S90 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC23.39■■□□□ 1.34
LYSMD1Q96S90 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
LYSMD1Q96S90 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC23.39■■□□□ 1.33
LYSMD1Q96S90 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC23.39■■□□□ 1.33
LYSMD1Q96S90 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
LYSMD1Q96S90 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
LYSMD1Q96S90 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC23.38■■□□□ 1.33
LYSMD1Q96S90 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
LYSMD1Q96S90 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
LYSMD1Q96S90 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
LYSMD1Q96S90 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
LYSMD1Q96S90 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC23.37■■□□□ 1.33
LYSMD1Q96S90 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
LYSMD1Q96S90 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
LYSMD1Q96S90 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC23.37■■□□□ 1.33
LYSMD1Q96S90 AC138932.3-201ENST00000567634 1902 ntBASIC23.37■■□□□ 1.33
LYSMD1Q96S90 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
LYSMD1Q96S90 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC23.36■■□□□ 1.33
LYSMD1Q96S90 AC137630.3-201ENST00000607245 391 ntBASIC23.36■■□□□ 1.33
LYSMD1Q96S90 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC23.36■■□□□ 1.33
LYSMD1Q96S90 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC23.36■■□□□ 1.33
LYSMD1Q96S90 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
LYSMD1Q96S90 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC23.35■■□□□ 1.33
LYSMD1Q96S90 AC009299.2-201ENST00000482477 511 ntBASIC23.35■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms