Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
VPS13AQ96RL7 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC23.64■■□□□ 1.37
VPS13AQ96RL7 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
VPS13AQ96RL7 GRAMD4P4-201ENST00000613563 1115 ntBASIC23.64■■□□□ 1.37
VPS13AQ96RL7 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC23.63■■□□□ 1.37
VPS13AQ96RL7 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC23.63■■□□□ 1.37
VPS13AQ96RL7 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC23.63■■□□□ 1.37
VPS13AQ96RL7 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC23.63■■□□□ 1.37
VPS13AQ96RL7 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC23.63■■□□□ 1.37
VPS13AQ96RL7 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
VPS13AQ96RL7 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC23.62■■□□□ 1.37
VPS13AQ96RL7 RHOF-204ENST00000537265 699 ntTSL 2 BASIC23.62■■□□□ 1.37
VPS13AQ96RL7 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC23.62■■□□□ 1.37
VPS13AQ96RL7 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
VPS13AQ96RL7 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
VPS13AQ96RL7 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
VPS13AQ96RL7 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
VPS13AQ96RL7 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC23.61■■□□□ 1.37
VPS13AQ96RL7 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC23.61■■□□□ 1.37
VPS13AQ96RL7 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
VPS13AQ96RL7 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
VPS13AQ96RL7 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC23.61■■□□□ 1.37
VPS13AQ96RL7 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC23.61■■□□□ 1.37
VPS13AQ96RL7 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC23.6■■□□□ 1.37
VPS13AQ96RL7 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC23.6■■□□□ 1.37
VPS13AQ96RL7 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC23.6■■□□□ 1.37
VPS13AQ96RL7 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
VPS13AQ96RL7 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC23.6■■□□□ 1.37
VPS13AQ96RL7 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC23.6■■□□□ 1.37
VPS13AQ96RL7 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC23.6■■□□□ 1.37
VPS13AQ96RL7 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC23.59■■□□□ 1.37
VPS13AQ96RL7 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC23.59■■□□□ 1.37
VPS13AQ96RL7 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC23.59■■□□□ 1.37
VPS13AQ96RL7 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
VPS13AQ96RL7 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
VPS13AQ96RL7 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC23.58■■□□□ 1.37
VPS13AQ96RL7 SNX5-217ENST00000606557 1087 ntBASIC23.58■■□□□ 1.37
VPS13AQ96RL7 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC23.58■■□□□ 1.37
VPS13AQ96RL7 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
VPS13AQ96RL7 AC034268.1-201ENST00000441047 882 ntBASIC23.58■■□□□ 1.37
VPS13AQ96RL7 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC23.58■■□□□ 1.37
VPS13AQ96RL7 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC23.58■■□□□ 1.36
VPS13AQ96RL7 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC23.58■■□□□ 1.36
VPS13AQ96RL7 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
VPS13AQ96RL7 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
VPS13AQ96RL7 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
VPS13AQ96RL7 SRD5A1P1-201ENST00000442297 786 ntBASIC23.57■■□□□ 1.36
VPS13AQ96RL7 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC23.57■■□□□ 1.36
VPS13AQ96RL7 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC23.57■■□□□ 1.36
VPS13AQ96RL7 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
VPS13AQ96RL7 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC23.56■■□□□ 1.36
VPS13AQ96RL7 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
VPS13AQ96RL7 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC23.56■■□□□ 1.36
VPS13AQ96RL7 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC23.56■■□□□ 1.36
VPS13AQ96RL7 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
VPS13AQ96RL7 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC23.56■■□□□ 1.36
VPS13AQ96RL7 GAK-223ENST00000628912 497 ntTSL 5 BASIC23.55■■□□□ 1.36
VPS13AQ96RL7 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC23.55■■□□□ 1.36
VPS13AQ96RL7 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC23.55■■□□□ 1.36
VPS13AQ96RL7 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
VPS13AQ96RL7 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
VPS13AQ96RL7 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
VPS13AQ96RL7 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC23.54■■□□□ 1.36
VPS13AQ96RL7 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
VPS13AQ96RL7 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC23.54■■□□□ 1.36
VPS13AQ96RL7 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
VPS13AQ96RL7 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC23.54■■□□□ 1.36
VPS13AQ96RL7 SLC47A1P1-202ENST00000449666 945 ntBASIC23.54■■□□□ 1.36
VPS13AQ96RL7 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC23.54■■□□□ 1.36
VPS13AQ96RL7 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
VPS13AQ96RL7 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC23.53■■□□□ 1.36
VPS13AQ96RL7 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC23.53■■□□□ 1.36
VPS13AQ96RL7 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC23.53■■□□□ 1.36
VPS13AQ96RL7 HACD1-201ENST00000326961 773 ntTSL 2 BASIC23.53■■□□□ 1.36
VPS13AQ96RL7 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
VPS13AQ96RL7 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC23.53■■□□□ 1.36
VPS13AQ96RL7 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC23.53■■□□□ 1.36
VPS13AQ96RL7 JTB-203ENST00000368589 1216 ntTSL 2 BASIC23.53■■□□□ 1.36
VPS13AQ96RL7 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
VPS13AQ96RL7 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
VPS13AQ96RL7 AC027682.1-201ENST00000562846 899 ntBASIC23.52■■□□□ 1.36
VPS13AQ96RL7 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
VPS13AQ96RL7 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC23.52■■□□□ 1.36
VPS13AQ96RL7 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
VPS13AQ96RL7 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC23.52■■□□□ 1.36
VPS13AQ96RL7 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC23.52■■□□□ 1.36
VPS13AQ96RL7 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
VPS13AQ96RL7 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
VPS13AQ96RL7 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
VPS13AQ96RL7 DLX3-202ENST00000512495 834 ntTSL 2 BASIC23.51■■□□□ 1.35
VPS13AQ96RL7 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC23.51■■□□□ 1.35
VPS13AQ96RL7 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
VPS13AQ96RL7 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC23.5■■□□□ 1.35
VPS13AQ96RL7 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC23.5■■□□□ 1.35
VPS13AQ96RL7 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
VPS13AQ96RL7 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
VPS13AQ96RL7 ASB1-202ENST00000409297 878 ntTSL 5 BASIC23.5■■□□□ 1.35
VPS13AQ96RL7 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC23.5■■□□□ 1.35
VPS13AQ96RL7 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC23.5■■□□□ 1.35
VPS13AQ96RL7 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC23.5■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms