Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SOX3P41225 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
SOX3P41225 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
SOX3P41225 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
SOX3P41225 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC21.96■■□□□ 1.11
SOX3P41225 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SOX3P41225 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SOX3P41225 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC21.96■■□□□ 1.11
SOX3P41225 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
SOX3P41225 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
SOX3P41225 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SOX3P41225 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SOX3P41225 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC21.95■■□□□ 1.1
SOX3P41225 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC21.95■■□□□ 1.1
SOX3P41225 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC21.95■■□□□ 1.1
SOX3P41225 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
SOX3P41225 AC096887.2-201ENST00000623443 1957 ntBASIC21.94■■□□□ 1.1
SOX3P41225 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
SOX3P41225 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
SOX3P41225 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
SOX3P41225 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SOX3P41225 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SOX3P41225 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
SOX3P41225 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC21.94■■□□□ 1.1
SOX3P41225 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
SOX3P41225 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SOX3P41225 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC21.94■■□□□ 1.1
SOX3P41225 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SOX3P41225 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
SOX3P41225 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
SOX3P41225 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC21.93■■□□□ 1.1
SOX3P41225 AC010501.1-201ENST00000606270 1962 ntBASIC21.93■■□□□ 1.1
SOX3P41225 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
SOX3P41225 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
SOX3P41225 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
SOX3P41225 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
SOX3P41225 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SOX3P41225 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
SOX3P41225 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
SOX3P41225 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC21.92■■□□□ 1.1
SOX3P41225 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
SOX3P41225 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC21.92■■□□□ 1.1
SOX3P41225 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC21.92■■□□□ 1.1
SOX3P41225 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
SOX3P41225 AL451085.2-201ENST00000605085 799 ntBASIC21.92■■□□□ 1.1
SOX3P41225 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
SOX3P41225 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SOX3P41225 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC21.92■■□□□ 1.1
SOX3P41225 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SOX3P41225 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
SOX3P41225 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC21.91■■□□□ 1.1
SOX3P41225 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
SOX3P41225 AC103724.3-201ENST00000564481 992 ntBASIC21.91■■□□□ 1.1
SOX3P41225 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SOX3P41225 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SOX3P41225 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC21.9■■□□□ 1.1
SOX3P41225 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SOX3P41225 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC21.9■■□□□ 1.1
SOX3P41225 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC21.9■■□□□ 1.1
SOX3P41225 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SOX3P41225 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
SOX3P41225 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SOX3P41225 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SOX3P41225 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC21.89■■□□□ 1.1
SOX3P41225 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.1
SOX3P41225 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC21.89■■□□□ 1.1
SOX3P41225 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
SOX3P41225 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC21.89■■□□□ 1.09
SOX3P41225 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
SOX3P41225 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SOX3P41225 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
SOX3P41225 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SOX3P41225 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SOX3P41225 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC21.89■■□□□ 1.09
SOX3P41225 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
SOX3P41225 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
SOX3P41225 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC21.88■■□□□ 1.09
SOX3P41225 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SOX3P41225 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
SOX3P41225 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SOX3P41225 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SOX3P41225 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SOX3P41225 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SOX3P41225 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SOX3P41225 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SOX3P41225 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SOX3P41225 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SOX3P41225 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC21.87■■□□□ 1.09
SOX3P41225 AL031848.2-201ENST00000607670 837 ntBASIC21.87■■□□□ 1.09
SOX3P41225 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC21.87■■□□□ 1.09
SOX3P41225 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
SOX3P41225 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SOX3P41225 RARA-203ENST00000394086 2008 ntTSL 2 BASIC21.87■■□□□ 1.09
SOX3P41225 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SOX3P41225 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SOX3P41225 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC21.86■■□□□ 1.09
SOX3P41225 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC21.86■■□□□ 1.09
SOX3P41225 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
SOX3P41225 AC022616.5-201ENST00000518796 181 ntBASIC21.86■■□□□ 1.09
SOX3P41225 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC21.86■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 9 ms