Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC25.7■■□□□ 1.71
TPM1P09493 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC25.7■■□□□ 1.71
TPM1P09493 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.71
TPM1P09493 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC25.7■■□□□ 1.71
TPM1P09493 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC25.7■■□□□ 1.71
TPM1P09493 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC25.7■■□□□ 1.7
TPM1P09493 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC25.7■■□□□ 1.7
TPM1P09493 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC25.7■■□□□ 1.7
TPM1P09493 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC25.7■■□□□ 1.7
TPM1P09493 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
TPM1P09493 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC25.69■■□□□ 1.7
TPM1P09493 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC25.69■■□□□ 1.7
TPM1P09493 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
TPM1P09493 PFN2-211ENST00000489155 636 ntTSL 4 BASIC25.69■■□□□ 1.7
TPM1P09493 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
TPM1P09493 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC25.69■■□□□ 1.7
TPM1P09493 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
TPM1P09493 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC25.68■■□□□ 1.7
TPM1P09493 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
TPM1P09493 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
TPM1P09493 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC25.68■■□□□ 1.7
TPM1P09493 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
TPM1P09493 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
TPM1P09493 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
TPM1P09493 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
TPM1P09493 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC25.68■■□□□ 1.7
TPM1P09493 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC25.68■■□□□ 1.7
TPM1P09493 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
TPM1P09493 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
TPM1P09493 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
TPM1P09493 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC25.67■■□□□ 1.7
TPM1P09493 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC25.67■■□□□ 1.7
TPM1P09493 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC25.67■■□□□ 1.7
TPM1P09493 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
TPM1P09493 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC25.66■■□□□ 1.7
TPM1P09493 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC25.66■■□□□ 1.7
TPM1P09493 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
TPM1P09493 MIR3960-201ENST00000583311 91 ntBASIC25.66■■□□□ 1.7
TPM1P09493 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
TPM1P09493 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
TPM1P09493 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC25.65■■□□□ 1.7
TPM1P09493 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
TPM1P09493 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC25.65■■□□□ 1.7
TPM1P09493 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
TPM1P09493 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
TPM1P09493 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC25.65■■□□□ 1.7
TPM1P09493 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
TPM1P09493 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC25.65■■□□□ 1.7
TPM1P09493 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
TPM1P09493 CASK-201ENST00000378154 2494 ntTSL 5 BASIC25.64■■□□□ 1.7
TPM1P09493 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC25.64■■□□□ 1.7
TPM1P09493 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC25.64■■□□□ 1.7
TPM1P09493 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
TPM1P09493 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC25.64■■□□□ 1.7
TPM1P09493 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
TPM1P09493 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC25.63■■□□□ 1.69
TPM1P09493 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC25.63■■□□□ 1.69
TPM1P09493 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC25.63■■□□□ 1.69
TPM1P09493 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
TPM1P09493 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
TPM1P09493 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
TPM1P09493 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC25.63■■□□□ 1.69
TPM1P09493 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
TPM1P09493 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC25.63■■□□□ 1.69
TPM1P09493 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC25.63■■□□□ 1.69
TPM1P09493 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
TPM1P09493 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
TPM1P09493 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC25.62■■□□□ 1.69
TPM1P09493 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
TPM1P09493 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC25.62■■□□□ 1.69
TPM1P09493 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
TPM1P09493 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
TPM1P09493 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
TPM1P09493 MIR6089-201ENST00000616698 64 ntBASIC25.62■■□□□ 1.69
TPM1P09493 GDI1-215ENST00000630693 786 ntTSL 4 BASIC25.62■■□□□ 1.69
TPM1P09493 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
TPM1P09493 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
TPM1P09493 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
TPM1P09493 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
TPM1P09493 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC25.61■■□□□ 1.69
TPM1P09493 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC25.61■■□□□ 1.69
TPM1P09493 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
TPM1P09493 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC25.6■■□□□ 1.69
TPM1P09493 AC025884.2-201ENST00000553429 711 ntBASIC25.6■■□□□ 1.69
TPM1P09493 MIR3648-2-201ENST00000581792 180 ntBASIC25.6■■□□□ 1.69
TPM1P09493 MIR3648-1-201ENST00000615959 180 ntBASIC25.6■■□□□ 1.69
TPM1P09493 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC25.6■■□□□ 1.69
TPM1P09493 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
TPM1P09493 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
TPM1P09493 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
TPM1P09493 LSR-205ENST00000427250 1606 ntTSL 2 BASIC25.59■■□□□ 1.69
TPM1P09493 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
TPM1P09493 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
TPM1P09493 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
TPM1P09493 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
TPM1P09493 METRNL-202ENST00000570778 967 ntTSL 5 BASIC25.59■■□□□ 1.69
TPM1P09493 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC25.59■■□□□ 1.69
TPM1P09493 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
TPM1P09493 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC25.59■■□□□ 1.69
TPM1P09493 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 82.4 ms