Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 SRD5A1P1-201ENST00000442297 786 ntBASIC21.49■■□□□ 1.03
COL6A6A6NMZ7 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC21.49■■□□□ 1.03
COL6A6A6NMZ7 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL6A6A6NMZ7 ESRRAP2-201ENST00000418437 1549 ntBASIC21.49■■□□□ 1.03
COL6A6A6NMZ7 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL6A6A6NMZ7 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL6A6A6NMZ7 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL6A6A6NMZ7 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC21.48■■□□□ 1.03
COL6A6A6NMZ7 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL6A6A6NMZ7 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC21.48■■□□□ 1.03
COL6A6A6NMZ7 SYT6-210ENST00000641643 1587 ntBASIC21.48■■□□□ 1.03
COL6A6A6NMZ7 BX255925.1-201ENST00000566954 1854 ntBASIC21.47■■□□□ 1.03
COL6A6A6NMZ7 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC21.47■■□□□ 1.03
COL6A6A6NMZ7 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL6A6A6NMZ7 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL6A6A6NMZ7 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC21.46■■□□□ 1.03
COL6A6A6NMZ7 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC21.46■■□□□ 1.03
COL6A6A6NMZ7 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC21.45■■□□□ 1.02
COL6A6A6NMZ7 AL137784.2-201ENST00000607332 1000 ntBASIC21.45■■□□□ 1.02
COL6A6A6NMZ7 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
COL6A6A6NMZ7 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
COL6A6A6NMZ7 SLC47A1P1-202ENST00000449666 945 ntBASIC21.45■■□□□ 1.02
COL6A6A6NMZ7 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC21.45■■□□□ 1.02
COL6A6A6NMZ7 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
COL6A6A6NMZ7 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC21.44■■□□□ 1.02
COL6A6A6NMZ7 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL6A6A6NMZ7 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC21.44■■□□□ 1.02
COL6A6A6NMZ7 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL6A6A6NMZ7 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
COL6A6A6NMZ7 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL6A6A6NMZ7 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
COL6A6A6NMZ7 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL6A6A6NMZ7 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL6A6A6NMZ7 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
COL6A6A6NMZ7 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
COL6A6A6NMZ7 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
COL6A6A6NMZ7 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC21.43■■□□□ 1.02
COL6A6A6NMZ7 MIR6722-201ENST00000617286 78 ntBASIC21.43■■□□□ 1.02
COL6A6A6NMZ7 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL6A6A6NMZ7 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC21.43■■□□□ 1.02
COL6A6A6NMZ7 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
COL6A6A6NMZ7 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL6A6A6NMZ7 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL6A6A6NMZ7 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC21.42■■□□□ 1.02
COL6A6A6NMZ7 AC027682.1-201ENST00000562846 899 ntBASIC21.42■■□□□ 1.02
COL6A6A6NMZ7 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL6A6A6NMZ7 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL6A6A6NMZ7 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
COL6A6A6NMZ7 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL6A6A6NMZ7 MIR4767-201ENST00000582827 78 ntBASIC21.41■■□□□ 1.02
COL6A6A6NMZ7 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
COL6A6A6NMZ7 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL6A6A6NMZ7 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC21.41■■□□□ 1.02
COL6A6A6NMZ7 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL6A6A6NMZ7 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
COL6A6A6NMZ7 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL6A6A6NMZ7 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC21.4■■□□□ 1.02
COL6A6A6NMZ7 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
COL6A6A6NMZ7 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL6A6A6NMZ7 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC21.4■■□□□ 1.02
COL6A6A6NMZ7 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC21.4■■□□□ 1.02
COL6A6A6NMZ7 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.02
COL6A6A6NMZ7 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
COL6A6A6NMZ7 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.39■■□□□ 1.02
COL6A6A6NMZ7 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
COL6A6A6NMZ7 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC21.39■■□□□ 1.01
COL6A6A6NMZ7 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
COL6A6A6NMZ7 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
COL6A6A6NMZ7 ABCB10P1-201ENST00000614297 2181 ntBASIC21.39■■□□□ 1.01
COL6A6A6NMZ7 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC21.39■■□□□ 1.01
COL6A6A6NMZ7 AC004448.1-201ENST00000458332 883 ntBASIC21.39■■□□□ 1.01
COL6A6A6NMZ7 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
COL6A6A6NMZ7 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
COL6A6A6NMZ7 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
COL6A6A6NMZ7 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
COL6A6A6NMZ7 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC21.38■■□□□ 1.01
COL6A6A6NMZ7 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC21.38■■□□□ 1.01
COL6A6A6NMZ7 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
COL6A6A6NMZ7 SNAI3-AS1-204ENST00000567997 2048 ntBASIC21.38■■□□□ 1.01
COL6A6A6NMZ7 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL6A6A6NMZ7 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC21.37■■□□□ 1.01
COL6A6A6NMZ7 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
COL6A6A6NMZ7 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
COL6A6A6NMZ7 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
COL6A6A6NMZ7 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL6A6A6NMZ7 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
COL6A6A6NMZ7 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC21.37■■□□□ 1.01
COL6A6A6NMZ7 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
COL6A6A6NMZ7 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
COL6A6A6NMZ7 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
COL6A6A6NMZ7 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
COL6A6A6NMZ7 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC21.36■■□□□ 1.01
COL6A6A6NMZ7 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC21.36■■□□□ 1.01
COL6A6A6NMZ7 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
COL6A6A6NMZ7 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
COL6A6A6NMZ7 AC011298.3-201ENST00000615796 283 ntBASIC21.36■■□□□ 1.01
COL6A6A6NMZ7 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
COL6A6A6NMZ7 SERBP1P1-201ENST00000396021 1160 ntBASIC21.35■■□□□ 1.01
COL6A6A6NMZ7 KRT18P5-201ENST00000436075 1291 ntBASIC21.35■■□□□ 1.01
COL6A6A6NMZ7 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC21.35■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 9.2 ms