Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
CPSF4LA6NMK7 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
CPSF4LA6NMK7 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC21.58■■□□□ 1.04
CPSF4LA6NMK7 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
CPSF4LA6NMK7 LINC00543-201ENST00000567234 1845 ntBASIC21.57■■□□□ 1.04
CPSF4LA6NMK7 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CPSF4LA6NMK7 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
CPSF4LA6NMK7 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CPSF4LA6NMK7 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CPSF4LA6NMK7 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC21.57■■□□□ 1.04
CPSF4LA6NMK7 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC21.57■■□□□ 1.04
CPSF4LA6NMK7 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
CPSF4LA6NMK7 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
CPSF4LA6NMK7 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC21.57■■□□□ 1.04
CPSF4LA6NMK7 LSR-205ENST00000427250 1606 ntTSL 2 BASIC21.56■■□□□ 1.04
CPSF4LA6NMK7 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CPSF4LA6NMK7 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
CPSF4LA6NMK7 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CPSF4LA6NMK7 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CPSF4LA6NMK7 MIR6089-201ENST00000616698 64 ntBASIC21.56■■□□□ 1.04
CPSF4LA6NMK7 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CPSF4LA6NMK7 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CPSF4LA6NMK7 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CPSF4LA6NMK7 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
CPSF4LA6NMK7 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CPSF4LA6NMK7 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
CPSF4LA6NMK7 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
CPSF4LA6NMK7 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CPSF4LA6NMK7 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CPSF4LA6NMK7 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CPSF4LA6NMK7 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CPSF4LA6NMK7 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CPSF4LA6NMK7 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CPSF4LA6NMK7 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CPSF4LA6NMK7 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CPSF4LA6NMK7 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC21.54■■□□□ 1.04
CPSF4LA6NMK7 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CPSF4LA6NMK7 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CPSF4LA6NMK7 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CPSF4LA6NMK7 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC21.53■■□□□ 1.04
CPSF4LA6NMK7 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CPSF4LA6NMK7 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
CPSF4LA6NMK7 HES4-204ENST00000484667 667 ntTSL 3 BASIC21.53■■□□□ 1.04
CPSF4LA6NMK7 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CPSF4LA6NMK7 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
CPSF4LA6NMK7 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
CPSF4LA6NMK7 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CPSF4LA6NMK7 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
CPSF4LA6NMK7 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CPSF4LA6NMK7 AC009831.1-201ENST00000580420 1582 ntBASIC21.53■■□□□ 1.04
CPSF4LA6NMK7 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC21.52■■□□□ 1.04
CPSF4LA6NMK7 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CPSF4LA6NMK7 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CPSF4LA6NMK7 ABHD17AP3-201ENST00000503096 1137 ntBASIC21.52■■□□□ 1.04
CPSF4LA6NMK7 AC133552.2-201ENST00000619106 1032 ntBASIC21.52■■□□□ 1.04
CPSF4LA6NMK7 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CPSF4LA6NMK7 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CPSF4LA6NMK7 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC21.52■■□□□ 1.04
CPSF4LA6NMK7 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
CPSF4LA6NMK7 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CPSF4LA6NMK7 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC21.52■■□□□ 1.03
CPSF4LA6NMK7 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CPSF4LA6NMK7 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC21.51■■□□□ 1.03
CPSF4LA6NMK7 FOXO3B-201ENST00000395675 1928 ntBASIC21.51■■□□□ 1.03
CPSF4LA6NMK7 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC21.51■■□□□ 1.03
CPSF4LA6NMK7 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CPSF4LA6NMK7 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CPSF4LA6NMK7 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
CPSF4LA6NMK7 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CPSF4LA6NMK7 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CPSF4LA6NMK7 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC21.5■■□□□ 1.03
CPSF4LA6NMK7 AC141586.4-201ENST00000624558 1573 ntBASIC21.5■■□□□ 1.03
CPSF4LA6NMK7 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CPSF4LA6NMK7 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CPSF4LA6NMK7 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CPSF4LA6NMK7 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CPSF4LA6NMK7 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
CPSF4LA6NMK7 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CPSF4LA6NMK7 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CPSF4LA6NMK7 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC21.49■■□□□ 1.03
CPSF4LA6NMK7 KRT18P10-201ENST00000388836 1287 ntBASIC21.49■■□□□ 1.03
CPSF4LA6NMK7 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC21.49■■□□□ 1.03
CPSF4LA6NMK7 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC21.49■■□□□ 1.03
CPSF4LA6NMK7 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CPSF4LA6NMK7 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CPSF4LA6NMK7 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CPSF4LA6NMK7 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC21.49■■□□□ 1.03
CPSF4LA6NMK7 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CPSF4LA6NMK7 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CPSF4LA6NMK7 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CPSF4LA6NMK7 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CPSF4LA6NMK7 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CPSF4LA6NMK7 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC21.48■■□□□ 1.03
CPSF4LA6NMK7 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC21.48■■□□□ 1.03
CPSF4LA6NMK7 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC21.48■■□□□ 1.03
CPSF4LA6NMK7 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC21.48■■□□□ 1.03
CPSF4LA6NMK7 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
CPSF4LA6NMK7 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CPSF4LA6NMK7 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CPSF4LA6NMK7 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC21.47■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 182.6 ms