Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRAV1-1A0A0B4J248 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.54
TRAV1-1A0A0B4J248 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRAV1-1A0A0B4J248 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRAV1-1A0A0B4J248 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRAV1-1A0A0B4J248 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC18.39■□□□□ 0.53
TRAV1-1A0A0B4J248 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC18.39■□□□□ 0.53
TRAV1-1A0A0B4J248 MIR6089-201ENST00000616698 64 ntBASIC18.39■□□□□ 0.53
TRAV1-1A0A0B4J248 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
TRAV1-1A0A0B4J248 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV1-1A0A0B4J248 AL024507.2-201ENST00000606070 2574 ntBASIC18.38■□□□□ 0.53
TRAV1-1A0A0B4J248 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV1-1A0A0B4J248 LINC00526-201ENST00000581067 1875 ntBASIC18.38■□□□□ 0.53
TRAV1-1A0A0B4J248 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC18.38■□□□□ 0.53
TRAV1-1A0A0B4J248 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
TRAV1-1A0A0B4J248 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
TRAV1-1A0A0B4J248 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV1-1A0A0B4J248 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV1-1A0A0B4J248 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV1-1A0A0B4J248 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRAV1-1A0A0B4J248 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
TRAV1-1A0A0B4J248 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
TRAV1-1A0A0B4J248 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAV1-1A0A0B4J248 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRAV1-1A0A0B4J248 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAV1-1A0A0B4J248 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAV1-1A0A0B4J248 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAV1-1A0A0B4J248 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC18.37■□□□□ 0.53
TRAV1-1A0A0B4J248 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAV1-1A0A0B4J248 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
TRAV1-1A0A0B4J248 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAV1-1A0A0B4J248 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC18.37■□□□□ 0.53
TRAV1-1A0A0B4J248 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRAV1-1A0A0B4J248 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRAV1-1A0A0B4J248 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRAV1-1A0A0B4J248 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRAV1-1A0A0B4J248 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TRAV1-1A0A0B4J248 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRAV1-1A0A0B4J248 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRAV1-1A0A0B4J248 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC18.36■□□□□ 0.53
TRAV1-1A0A0B4J248 LSR-205ENST00000427250 1606 ntTSL 2 BASIC18.36■□□□□ 0.53
TRAV1-1A0A0B4J248 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TRAV1-1A0A0B4J248 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAV1-1A0A0B4J248 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
TRAV1-1A0A0B4J248 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TRAV1-1A0A0B4J248 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC18.35■□□□□ 0.53
TRAV1-1A0A0B4J248 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAV1-1A0A0B4J248 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
TRAV1-1A0A0B4J248 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
TRAV1-1A0A0B4J248 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC18.35■□□□□ 0.53
TRAV1-1A0A0B4J248 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
TRAV1-1A0A0B4J248 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC18.35■□□□□ 0.53
TRAV1-1A0A0B4J248 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TRAV1-1A0A0B4J248 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC18.35■□□□□ 0.53
TRAV1-1A0A0B4J248 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAV1-1A0A0B4J248 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAV1-1A0A0B4J248 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAV1-1A0A0B4J248 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC18.34■□□□□ 0.53
TRAV1-1A0A0B4J248 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV1-1A0A0B4J248 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC18.34■□□□□ 0.53
TRAV1-1A0A0B4J248 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV1-1A0A0B4J248 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC18.34■□□□□ 0.53
TRAV1-1A0A0B4J248 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
TRAV1-1A0A0B4J248 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV1-1A0A0B4J248 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV1-1A0A0B4J248 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV1-1A0A0B4J248 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV1-1A0A0B4J248 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV1-1A0A0B4J248 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC18.34■□□□□ 0.53
TRAV1-1A0A0B4J248 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
TRAV1-1A0A0B4J248 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV1-1A0A0B4J248 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC18.33■□□□□ 0.53
TRAV1-1A0A0B4J248 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC18.33■□□□□ 0.53
TRAV1-1A0A0B4J248 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
TRAV1-1A0A0B4J248 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC18.33■□□□□ 0.53
TRAV1-1A0A0B4J248 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
TRAV1-1A0A0B4J248 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC18.33■□□□□ 0.52
TRAV1-1A0A0B4J248 AC005559.1-201ENST00000589661 871 ntBASIC18.33■□□□□ 0.52
TRAV1-1A0A0B4J248 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRAV1-1A0A0B4J248 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRAV1-1A0A0B4J248 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
TRAV1-1A0A0B4J248 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRAV1-1A0A0B4J248 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRAV1-1A0A0B4J248 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRAV1-1A0A0B4J248 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRAV1-1A0A0B4J248 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TRAV1-1A0A0B4J248 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TRAV1-1A0A0B4J248 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TRAV1-1A0A0B4J248 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRAV1-1A0A0B4J248 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TRAV1-1A0A0B4J248 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRAV1-1A0A0B4J248 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRAV1-1A0A0B4J248 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC18.32■□□□□ 0.52
TRAV1-1A0A0B4J248 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
TRAV1-1A0A0B4J248 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV1-1A0A0B4J248 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC18.31■□□□□ 0.52
TRAV1-1A0A0B4J248 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV1-1A0A0B4J248 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
TRAV1-1A0A0B4J248 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV1-1A0A0B4J248 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 12.2 ms