Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 AC129492.7-201ENST00000622992 756 ntBASIC31.52■■■□□ 2.64
SENP3-EIF4A1A0A087X0R7 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
SENP3-EIF4A1A0A087X0R7 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC31.52■■■□□ 2.64
SENP3-EIF4A1A0A087X0R7 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC31.52■■■□□ 2.64
SENP3-EIF4A1A0A087X0R7 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC31.51■■■□□ 2.63
SENP3-EIF4A1A0A087X0R7 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
SENP3-EIF4A1A0A087X0R7 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC31.51■■■□□ 2.63
SENP3-EIF4A1A0A087X0R7 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC31.5■■■□□ 2.63
SENP3-EIF4A1A0A087X0R7 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC31.5■■■□□ 2.63
SENP3-EIF4A1A0A087X0R7 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC31.5■■■□□ 2.63
SENP3-EIF4A1A0A087X0R7 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC31.5■■■□□ 2.63
SENP3-EIF4A1A0A087X0R7 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC31.5■■■□□ 2.63
SENP3-EIF4A1A0A087X0R7 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC31.5■■■□□ 2.63
SENP3-EIF4A1A0A087X0R7 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC31.5■■■□□ 2.63
SENP3-EIF4A1A0A087X0R7 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC31.49■■■□□ 2.63
SENP3-EIF4A1A0A087X0R7 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC31.49■■■□□ 2.63
SENP3-EIF4A1A0A087X0R7 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC31.49■■■□□ 2.63
SENP3-EIF4A1A0A087X0R7 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC31.49■■■□□ 2.63
SENP3-EIF4A1A0A087X0R7 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC31.49■■■□□ 2.63
SENP3-EIF4A1A0A087X0R7 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
SENP3-EIF4A1A0A087X0R7 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
SENP3-EIF4A1A0A087X0R7 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC31.48■■■□□ 2.63
SENP3-EIF4A1A0A087X0R7 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC31.48■■■□□ 2.63
SENP3-EIF4A1A0A087X0R7 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC31.48■■■□□ 2.63
SENP3-EIF4A1A0A087X0R7 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC31.47■■■□□ 2.63
SENP3-EIF4A1A0A087X0R7 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC31.47■■■□□ 2.63
SENP3-EIF4A1A0A087X0R7 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC31.47■■■□□ 2.63
SENP3-EIF4A1A0A087X0R7 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC31.47■■■□□ 2.63
SENP3-EIF4A1A0A087X0R7 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC31.47■■■□□ 2.63
SENP3-EIF4A1A0A087X0R7 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
SENP3-EIF4A1A0A087X0R7 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC31.47■■■□□ 2.63
SENP3-EIF4A1A0A087X0R7 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC31.46■■■□□ 2.63
SENP3-EIF4A1A0A087X0R7 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC31.46■■■□□ 2.63
SENP3-EIF4A1A0A087X0R7 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
SENP3-EIF4A1A0A087X0R7 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
SENP3-EIF4A1A0A087X0R7 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
SENP3-EIF4A1A0A087X0R7 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC31.45■■■□□ 2.63
SENP3-EIF4A1A0A087X0R7 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.62
SENP3-EIF4A1A0A087X0R7 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.62
SENP3-EIF4A1A0A087X0R7 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.62
SENP3-EIF4A1A0A087X0R7 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC31.44■■■□□ 2.62
SENP3-EIF4A1A0A087X0R7 KRT8P33-201ENST00000508125 1423 ntBASIC31.44■■■□□ 2.62
SENP3-EIF4A1A0A087X0R7 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC31.44■■■□□ 2.62
SENP3-EIF4A1A0A087X0R7 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC31.44■■■□□ 2.62
SENP3-EIF4A1A0A087X0R7 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC31.44■■■□□ 2.62
SENP3-EIF4A1A0A087X0R7 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC31.44■■■□□ 2.62
SENP3-EIF4A1A0A087X0R7 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
SENP3-EIF4A1A0A087X0R7 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC31.43■■■□□ 2.62
SENP3-EIF4A1A0A087X0R7 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC31.43■■■□□ 2.62
SENP3-EIF4A1A0A087X0R7 AC142381.3-201ENST00000568208 1670 ntBASIC31.43■■■□□ 2.62
SENP3-EIF4A1A0A087X0R7 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC31.43■■■□□ 2.62
SENP3-EIF4A1A0A087X0R7 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC31.43■■■□□ 2.62
SENP3-EIF4A1A0A087X0R7 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
SENP3-EIF4A1A0A087X0R7 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC31.42■■■□□ 2.62
SENP3-EIF4A1A0A087X0R7 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC31.42■■■□□ 2.62
SENP3-EIF4A1A0A087X0R7 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
SENP3-EIF4A1A0A087X0R7 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
SENP3-EIF4A1A0A087X0R7 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC31.42■■■□□ 2.62
SENP3-EIF4A1A0A087X0R7 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
SENP3-EIF4A1A0A087X0R7 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC31.41■■■□□ 2.62
SENP3-EIF4A1A0A087X0R7 TMEM202-AS1-202ENST00000565181 2325 ntBASIC31.41■■■□□ 2.62
SENP3-EIF4A1A0A087X0R7 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC31.41■■■□□ 2.62
SENP3-EIF4A1A0A087X0R7 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
SENP3-EIF4A1A0A087X0R7 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC31.4■■■□□ 2.62
SENP3-EIF4A1A0A087X0R7 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC31.4■■■□□ 2.62
SENP3-EIF4A1A0A087X0R7 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC31.4■■■□□ 2.62
SENP3-EIF4A1A0A087X0R7 AC093323.1-202ENST00000635031 2045 ntBASIC31.4■■■□□ 2.62
SENP3-EIF4A1A0A087X0R7 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC31.4■■■□□ 2.62
SENP3-EIF4A1A0A087X0R7 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
SENP3-EIF4A1A0A087X0R7 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
SENP3-EIF4A1A0A087X0R7 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC31.39■■■□□ 2.62
SENP3-EIF4A1A0A087X0R7 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC31.39■■■□□ 2.62
SENP3-EIF4A1A0A087X0R7 PREB-202ENST00000406567 1910 ntTSL 5 BASIC31.39■■■□□ 2.62
SENP3-EIF4A1A0A087X0R7 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
SENP3-EIF4A1A0A087X0R7 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC31.38■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC31.38■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC31.38■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC31.38■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC31.37■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC31.37■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC31.37■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC31.37■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC31.37■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC31.36■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC31.36■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC31.36■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 PEMT-206ENST00000435340 960 ntTSL 5 BASIC31.36■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC31.36■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC31.36■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC31.35■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 AC018755.3-202ENST00000596210 929 ntBASIC31.35■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC31.35■■■□□ 2.61
SENP3-EIF4A1A0A087X0R7 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
Retrieved 100 of 98,524 protein–RNA pairs in 131.8 ms