Protein–RNA interactions for Protein: P38854

TDA11, Topoisomerase I damage affected protein 11, yeastyeast

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
TDA11P38854 SRB2YHR041C 633 nt11.93□□□□□ -0.5
TDA11P38854 YHL050CYHL050C 2094 nt11.93□□□□□ -0.5
TDA11P38854 BDH2YAL061W 1254 nt11.92□□□□□ -0.5
TDA11P38854 SIS1YNL007C 1059 nt11.86□□□□□ -0.51
TDA11P38854 PTK1YKL198C 1989 nt11.81□□□□□ -0.52
TDA11P38854 TRM9YML014W 840 nt11.81□□□□□ -0.52
TDA11P38854 BOP3YNL042W 1191 nt11.8□□□□□ -0.52
TDA11P38854 GFD2YCL036W 1701 nt11.79□□□□□ -0.52
TDA11P38854 FPS1YLL043W 2010 nt11.78□□□□□ -0.52
TDA11P38854 YGR021WYGR021W 873 nt11.78□□□□□ -0.52
TDA11P38854 CCT6YDR188W 1641 nt11.78□□□□□ -0.52
TDA11P38854 HOM6YJR139C 1080 nt11.76□□□□□ -0.53
TDA11P38854 NPL3YDR432W 1245 nt11.75□□□□□ -0.53
TDA11P38854 RRT12YCR045C 1476 nt11.75□□□□□ -0.53
TDA11P38854 ART5YGR068C 1761 nt11.74□□□□□ -0.53
TDA11P38854 WWM1YFL010C 636 nt11.74□□□□□ -0.53
TDA11P38854 RTS2YOR077W 699 nt11.74□□□□□ -0.53
TDA11P38854 SUF2tP(AGG)C 72 nt11.7□□□□□ -0.54
TDA11P38854 SUF10tP(AGG)N 72 nt11.7□□□□□ -0.54
TDA11P38854 MNP1YGL068W 585 nt11.69□□□□□ -0.54
TDA11P38854 UME6YDR207C 2511 nt11.67□□□□□ -0.54
TDA11P38854 BOR1YNL275W 1731 nt11.65□□□□□ -0.54
TDA11P38854 YOL037CYOL037C 354 nt11.64□□□□□ -0.55
TDA11P38854 CUE1YMR264W 612 nt11.63□□□□□ -0.55
TDA11P38854 PET9YBL030C 957 nt11.62□□□□□ -0.55
TDA11P38854 YNL195CYNL195C 786 nt11.61□□□□□ -0.55
TDA11P38854 LSM3YLR438C-A 270 nt11.6□□□□□ -0.55
TDA11P38854 YFL021C-AYFL021C-A 855 nt11.59□□□□□ -0.55
TDA11P38854 RKM5YLR137W 1104 nt11.58□□□□□ -0.56
TDA11P38854 NCP1YHR042W 2076 nt11.58□□□□□ -0.56
TDA11P38854 YJL225CYJL225C 5277 nt11.58□□□□□ -0.56
TDA11P38854 YFL054CYFL054C 1941 nt11.49□□□□□ -0.57
TDA11P38854 tM(CAU)CtM(CAU)C 72 nt11.49□□□□□ -0.57
TDA11P38854 IMT4tM(CAU)E 72 nt11.49□□□□□ -0.57
TDA11P38854 IMT3tM(CAU)J3 72 nt11.49□□□□□ -0.57
TDA11P38854 IMT1tM(CAU)O1 72 nt11.49□□□□□ -0.57
TDA11P38854 IMT2tM(CAU)P 72 nt11.49□□□□□ -0.57
TDA11P38854 SPT8YLR055C 1809 nt11.49□□□□□ -0.57
TDA11P38854 YCH1YGR203W 447 nt11.48□□□□□ -0.57
TDA11P38854 YIL100WYIL100W 354 nt11.48□□□□□ -0.57
TDA11P38854 TIR4YOR009W 1464 nt11.4□□□□□ -0.58
TDA11P38854 YLR281CYLR281C 468 nt11.35□□□□□ -0.59
TDA11P38854 YMR057CYMR057C 372 nt11.35□□□□□ -0.59
TDA11P38854 YLR236CYLR236C 324 nt11.31□□□□□ -0.6
TDA11P38854 MCH5YOR306C 1566 nt11.3□□□□□ -0.6
TDA11P38854 HSP60YLR259C 1719 nt11.29□□□□□ -0.6
TDA11P38854 PUS2YGL063W 1113 nt11.27□□□□□ -0.61
TDA11P38854 WHI5YOR083W 888 nt11.25□□□□□ -0.61
TDA11P38854 LCB1YMR296C 1677 nt11.24□□□□□ -0.61
TDA11P38854 ALG12YNR030W 1656 nt11.24□□□□□ -0.61
TDA11P38854 RDN37-1RDN37-1 5354 nt11.24□□□□□ -0.61
TDA11P38854 RDN37-2RDN37-2 5354 nt11.24□□□□□ -0.61
TDA11P38854 SWE1YJL187C 2460 nt11.22□□□□□ -0.61
TDA11P38854 MOT3YMR070W 1473 nt11.12□□□□□ -0.63
TDA11P38854 GLK1YCL040W 1503 nt11.09□□□□□ -0.63
TDA11P38854 YLR154C-GYLR154C-G 150 nt11.07□□□□□ -0.64
TDA11P38854 LYS4YDR234W 2082 nt11.05□□□□□ -0.64
TDA11P38854 IMP2'YIL154C 1041 nt11.05□□□□□ -0.64
TDA11P38854 DSK2YMR276W 1122 nt11.05□□□□□ -0.64
TDA11P38854 YPR011CYPR011C 981 nt11.05□□□□□ -0.64
TDA11P38854 YCL048W-AYCL048W-A 240 nt11.01□□□□□ -0.65
TDA11P38854 FMP45YDL222C 930 nt10.97□□□□□ -0.65
TDA11P38854 FUR4YBR021W 1902 nt10.94□□□□□ -0.66
TDA11P38854 YJL152WYJL152W 360 nt10.91□□□□□ -0.66
TDA11P38854 NAR1YNL240C 1476 nt10.9□□□□□ -0.66
TDA11P38854 BIO4YNR057C 714 nt10.9□□□□□ -0.66
TDA11P38854 SIM1YIL123W 1431 nt10.9□□□□□ -0.66
TDA11P38854 Q0182Q0182 405 nt10.89□□□□□ -0.67
TDA11P38854 AAC1YMR056C 930 nt10.84□□□□□ -0.67
TDA11P38854 PRP4YPR178W 1398 nt10.84□□□□□ -0.67
TDA11P38854 MRPL8YJL063C 717 nt10.83□□□□□ -0.68
TDA11P38854 ERV46YAL042W 1248 nt10.83□□□□□ -0.68
TDA11P38854 YEL076C-AYEL076C-A 651 nt10.8□□□□□ -0.68
TDA11P38854 YEL076CYEL076C 651 nt10.8□□□□□ -0.68
TDA11P38854 YLR464WYLR464W 651 nt10.8□□□□□ -0.68
TDA11P38854 PCM1YEL058W 1674 nt10.79□□□□□ -0.68
TDA11P38854 DPS1YLL018C 1674 nt10.79□□□□□ -0.68
TDA11P38854 IDH1YNL037C 1083 nt10.78□□□□□ -0.68
TDA11P38854 LPX1YOR084W 1164 nt10.78□□□□□ -0.68
TDA11P38854 FMP52YER004W 696 nt10.77□□□□□ -0.69
TDA11P38854 RRD1YIL153W 1182 nt10.77□□□□□ -0.69
TDA11P38854 BIO5YNR056C 1686 nt10.73□□□□□ -0.69
TDA11P38854 PBP1YGR178C 2169 nt10.72□□□□□ -0.69
TDA11P38854 YHR056W-AYHR056W-A 435 nt10.72□□□□□ -0.69
TDA11P38854 CCA1YER168C 1641 nt10.7□□□□□ -0.7
TDA11P38854 YKR040CYKR040C 504 nt10.68□□□□□ -0.7
TDA11P38854 SPP1YPL138C 1062 nt10.68□□□□□ -0.7
TDA11P38854 SNF1YDR477W 1902 nt10.68□□□□□ -0.7
TDA11P38854 YDR433WYDR433W 441 nt10.66□□□□□ -0.7
TDA11P38854 CRR1YLR213C 1269 nt10.66□□□□□ -0.7
TDA11P38854 CYT2YKL087C 675 nt10.65□□□□□ -0.7
TDA11P38854 BMT6YLR063W 1098 nt10.65□□□□□ -0.7
TDA11P38854 ERF2YLR246W 1080 nt10.65□□□□□ -0.7
TDA11P38854 ADO1YJR105W 1023 nt10.64□□□□□ -0.71
TDA11P38854 RTG1YOL067C 534 nt10.64□□□□□ -0.71
TDA11P38854 GBP2YCL011C 1284 nt10.64□□□□□ -0.71
TDA11P38854 DED1YOR204W 1815 nt10.63□□□□□ -0.71
TDA11P38854 YKR005CYKR005C 1578 nt10.61□□□□□ -0.71
TDA11P38854 SNF6YHL025W 999 nt10.6□□□□□ -0.71
TDA11P38854 RAX1YOR301W 1308 nt10.59□□□□□ -0.71
Retrieved 100 of 7,029 protein–RNA pairs in 11.7 ms