Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC14.47□□□□□ -0.09
HIF3AQ9Y2N7 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC14.46□□□□□ -0.09
HIF3AQ9Y2N7 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
HIF3AQ9Y2N7 ZBTB45P2-201ENST00000452245 1531 ntBASIC14.46□□□□□ -0.09
HIF3AQ9Y2N7 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC14.46□□□□□ -0.09
HIF3AQ9Y2N7 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
HIF3AQ9Y2N7 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
HIF3AQ9Y2N7 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC14.46□□□□□ -0.09
HIF3AQ9Y2N7 BANP-201ENST00000286122 2368 ntTSL 5 BASIC14.46□□□□□ -0.09
HIF3AQ9Y2N7 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
HIF3AQ9Y2N7 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
HIF3AQ9Y2N7 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
HIF3AQ9Y2N7 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
HIF3AQ9Y2N7 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC14.46□□□□□ -0.09
HIF3AQ9Y2N7 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
HIF3AQ9Y2N7 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
HIF3AQ9Y2N7 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
HIF3AQ9Y2N7 MIR346-201ENST00000362234 95 ntBASIC14.46□□□□□ -0.09
HIF3AQ9Y2N7 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC14.46□□□□□ -0.09
HIF3AQ9Y2N7 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
HIF3AQ9Y2N7 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
HIF3AQ9Y2N7 IMP4-203ENST00000409935 958 ntTSL 5 BASIC14.46□□□□□ -0.09
HIF3AQ9Y2N7 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC14.46□□□□□ -0.09
HIF3AQ9Y2N7 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
HIF3AQ9Y2N7 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC14.46□□□□□ -0.09
HIF3AQ9Y2N7 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC14.46□□□□□ -0.09
HIF3AQ9Y2N7 RNF34-208ENST00000555076 593 ntTSL 3 BASIC14.46□□□□□ -0.09
HIF3AQ9Y2N7 AP000842.3-202ENST00000569238 1080 ntBASIC14.46□□□□□ -0.09
HIF3AQ9Y2N7 AC026120.1-201ENST00000611536 926 ntBASIC14.46□□□□□ -0.09
HIF3AQ9Y2N7 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC14.46□□□□□ -0.09
HIF3AQ9Y2N7 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC14.46□□□□□ -0.09
HIF3AQ9Y2N7 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC14.46□□□□□ -0.09
HIF3AQ9Y2N7 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC14.46□□□□□ -0.09
HIF3AQ9Y2N7 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC14.46□□□□□ -0.09
HIF3AQ9Y2N7 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC14.46□□□□□ -0.09
HIF3AQ9Y2N7 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
HIF3AQ9Y2N7 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC14.46□□□□□ -0.09
HIF3AQ9Y2N7 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
HIF3AQ9Y2N7 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC14.46□□□□□ -0.1
HIF3AQ9Y2N7 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
HIF3AQ9Y2N7 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
HIF3AQ9Y2N7 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
HIF3AQ9Y2N7 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
HIF3AQ9Y2N7 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.1
HIF3AQ9Y2N7 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
HIF3AQ9Y2N7 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
HIF3AQ9Y2N7 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
HIF3AQ9Y2N7 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC14.46□□□□□ -0.1
HIF3AQ9Y2N7 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
HIF3AQ9Y2N7 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC14.46□□□□□ -0.1
HIF3AQ9Y2N7 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC14.46□□□□□ -0.1
HIF3AQ9Y2N7 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
HIF3AQ9Y2N7 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.1
HIF3AQ9Y2N7 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 AC073347.1-201ENST00000421633 2643 ntBASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 SPCS2P4-201ENST00000436160 681 ntBASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 ACTG1P14-201ENST00000446382 1122 ntBASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 SPDYE11-202ENST00000450699 704 ntBASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 KRT8P23-201ENST00000560090 1207 ntBASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 LINC01225-203ENST00000563550 1244 ntBASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 SPDYE9P-201ENST00000570642 692 ntBASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 SSH2-211ENST00000590153 570 ntTSL 4 BASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 SPDYE10P-202ENST00000612005 668 ntBASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 SPDYE8P-202ENST00000612377 668 ntBASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HIF3AQ9Y2N7 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 63.9 ms