Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RNF41Q9H4P4 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RNF41Q9H4P4 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
RNF41Q9H4P4 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
RNF41Q9H4P4 AC114501.2-201ENST00000439631 535 ntBASIC18.8■□□□□ 0.6
RNF41Q9H4P4 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC18.8■□□□□ 0.6
RNF41Q9H4P4 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC18.8■□□□□ 0.6
RNF41Q9H4P4 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC18.8■□□□□ 0.6
RNF41Q9H4P4 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
RNF41Q9H4P4 STOM-203ENST00000538954 1257 ntTSL 5 BASIC18.8■□□□□ 0.6
RNF41Q9H4P4 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC18.8■□□□□ 0.6
RNF41Q9H4P4 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC18.8■□□□□ 0.6
RNF41Q9H4P4 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC18.8■□□□□ 0.6
RNF41Q9H4P4 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC18.8■□□□□ 0.6
RNF41Q9H4P4 AC097359.3-201ENST00000603982 1210 ntBASIC18.8■□□□□ 0.6
RNF41Q9H4P4 AC008738.7-201ENST00000609744 511 ntBASIC18.8■□□□□ 0.6
RNF41Q9H4P4 TEX48-202ENST00000612244 662 ntTSL 3 BASIC18.8■□□□□ 0.6
RNF41Q9H4P4 5S_rRNA.22-201ENST00000614916 106 ntBASIC18.8■□□□□ 0.6
RNF41Q9H4P4 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC18.8■□□□□ 0.6
RNF41Q9H4P4 AL109936.8-201ENST00000641772 604 ntBASIC18.8■□□□□ 0.6
RNF41Q9H4P4 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RNF41Q9H4P4 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
RNF41Q9H4P4 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC18.8■□□□□ 0.6
RNF41Q9H4P4 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC18.8■□□□□ 0.6
RNF41Q9H4P4 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
RNF41Q9H4P4 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RNF41Q9H4P4 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC18.8■□□□□ 0.6
RNF41Q9H4P4 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RNF41Q9H4P4 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC18.8■□□□□ 0.6
RNF41Q9H4P4 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
RNF41Q9H4P4 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RNF41Q9H4P4 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC18.8■□□□□ 0.6
RNF41Q9H4P4 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RNF41Q9H4P4 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
RNF41Q9H4P4 FLII-221ENST00000578558 2377 ntTSL 5 BASIC18.79■□□□□ 0.6
RNF41Q9H4P4 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
RNF41Q9H4P4 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
RNF41Q9H4P4 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC18.79■□□□□ 0.6
RNF41Q9H4P4 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
RNF41Q9H4P4 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RNF41Q9H4P4 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RNF41Q9H4P4 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
RNF41Q9H4P4 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RNF41Q9H4P4 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC18.79■□□□□ 0.6
RNF41Q9H4P4 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC18.79■□□□□ 0.6
RNF41Q9H4P4 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
RNF41Q9H4P4 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
RNF41Q9H4P4 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RNF41Q9H4P4 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC18.79■□□□□ 0.6
RNF41Q9H4P4 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC18.79■□□□□ 0.6
RNF41Q9H4P4 TARDBPP1-201ENST00000442013 1203 ntBASIC18.79■□□□□ 0.6
RNF41Q9H4P4 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RNF41Q9H4P4 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RNF41Q9H4P4 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC18.79■□□□□ 0.6
RNF41Q9H4P4 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC18.79■□□□□ 0.6
RNF41Q9H4P4 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RNF41Q9H4P4 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC18.79■□□□□ 0.6
RNF41Q9H4P4 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC18.79■□□□□ 0.6
RNF41Q9H4P4 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RNF41Q9H4P4 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
RNF41Q9H4P4 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
RNF41Q9H4P4 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 NME4-207ENST00000450036 985 ntTSL 3 BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 UGT1A2P-201ENST00000454886 866 ntBASIC18.78■□□□□ 0.6
RNF41Q9H4P4 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 REEP4-207ENST00000523293 913 ntTSL 3 BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 AC135586.1-201ENST00000539323 574 ntBASIC18.78■□□□□ 0.6
RNF41Q9H4P4 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC18.78■□□□□ 0.6
RNF41Q9H4P4 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms