Protein–RNA interactions for Protein: Q9H347

UBQLN3, Ubiquilin-3, humanhuman

Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3Q9H347 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 MIR770-201ENST00000390219 98 ntBASIC14.85□□□□□ -0.03
UBQLN3Q9H347 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 AC107890.1-201ENST00000422478 521 ntBASIC14.85□□□□□ -0.03
UBQLN3Q9H347 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 PPP6R2P1-201ENST00000450880 1275 ntBASIC14.85□□□□□ -0.03
UBQLN3Q9H347 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 DUX4L27-201ENST00000554796 1261 ntBASIC14.85□□□□□ -0.03
UBQLN3Q9H347 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 AC007967.4-201ENST00000614700 386 ntBASIC14.85□□□□□ -0.03
UBQLN3Q9H347 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
UBQLN3Q9H347 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
UBQLN3Q9H347 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
UBQLN3Q9H347 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC14.84□□□□□ -0.03
UBQLN3Q9H347 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
UBQLN3Q9H347 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
UBQLN3Q9H347 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC14.84□□□□□ -0.03
UBQLN3Q9H347 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
UBQLN3Q9H347 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC14.84□□□□□ -0.03
UBQLN3Q9H347 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
UBQLN3Q9H347 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
UBQLN3Q9H347 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
UBQLN3Q9H347 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
UBQLN3Q9H347 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
UBQLN3Q9H347 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC14.84□□□□□ -0.03
UBQLN3Q9H347 BAD-202ENST00000394531 631 ntTSL 3 BASIC14.84□□□□□ -0.03
UBQLN3Q9H347 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC14.84□□□□□ -0.03
UBQLN3Q9H347 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
UBQLN3Q9H347 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC14.84□□□□□ -0.03
UBQLN3Q9H347 BAD-207ENST00000544785 525 ntTSL 3 BASIC14.84□□□□□ -0.03
UBQLN3Q9H347 MIR4453-201ENST00000584019 89 ntBASIC14.84□□□□□ -0.03
UBQLN3Q9H347 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC14.84□□□□□ -0.03
UBQLN3Q9H347 AC005498.2-205ENST00000593218 784 ntBASIC14.84□□□□□ -0.03
UBQLN3Q9H347 AL390955.2-201ENST00000603032 514 ntBASIC14.84□□□□□ -0.03
UBQLN3Q9H347 COQ4-205ENST00000609948 956 ntTSL 2 BASIC14.84□□□□□ -0.03
UBQLN3Q9H347 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
UBQLN3Q9H347 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
UBQLN3Q9H347 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC14.84□□□□□ -0.03
UBQLN3Q9H347 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
UBQLN3Q9H347 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
UBQLN3Q9H347 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
UBQLN3Q9H347 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
UBQLN3Q9H347 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
UBQLN3Q9H347 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
UBQLN3Q9H347 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
UBQLN3Q9H347 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
UBQLN3Q9H347 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC14.83□□□□□ -0.03
UBQLN3Q9H347 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
UBQLN3Q9H347 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
UBQLN3Q9H347 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.03
UBQLN3Q9H347 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.03
UBQLN3Q9H347 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC14.83□□□□□ -0.04
UBQLN3Q9H347 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
UBQLN3Q9H347 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
UBQLN3Q9H347 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
UBQLN3Q9H347 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
UBQLN3Q9H347 RELA-227ENST00000615805 2236 ntTSL 5 BASIC14.83□□□□□ -0.04
UBQLN3Q9H347 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
UBQLN3Q9H347 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
UBQLN3Q9H347 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
UBQLN3Q9H347 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
UBQLN3Q9H347 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
UBQLN3Q9H347 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC14.83□□□□□ -0.04
UBQLN3Q9H347 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC14.83□□□□□ -0.04
UBQLN3Q9H347 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC14.83□□□□□ -0.04
UBQLN3Q9H347 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC14.83□□□□□ -0.04
UBQLN3Q9H347 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC14.83□□□□□ -0.04
UBQLN3Q9H347 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC14.83□□□□□ -0.04
UBQLN3Q9H347 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
UBQLN3Q9H347 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC14.83□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 84.6 ms