Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
MMP28Q9H239 AC009336.1-201ENST00000608941 1553 ntBASIC14.22□□□□□ -0.13
MMP28Q9H239 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
MMP28Q9H239 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC14.22□□□□□ -0.13
MMP28Q9H239 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
MMP28Q9H239 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
MMP28Q9H239 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC14.22□□□□□ -0.13
MMP28Q9H239 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
MMP28Q9H239 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
MMP28Q9H239 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
MMP28Q9H239 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
MMP28Q9H239 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC14.22□□□□□ -0.13
MMP28Q9H239 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC14.22□□□□□ -0.13
MMP28Q9H239 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC14.22□□□□□ -0.13
MMP28Q9H239 AP000347.1-202ENST00000435868 847 ntBASIC14.22□□□□□ -0.13
MMP28Q9H239 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC14.22□□□□□ -0.13
MMP28Q9H239 RBSN-204ENST00000449050 903 ntTSL 2 BASIC14.22□□□□□ -0.13
MMP28Q9H239 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC14.22□□□□□ -0.13
MMP28Q9H239 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC14.22□□□□□ -0.13
MMP28Q9H239 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC14.22□□□□□ -0.13
MMP28Q9H239 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC14.22□□□□□ -0.13
MMP28Q9H239 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC14.22□□□□□ -0.13
MMP28Q9H239 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
MMP28Q9H239 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
MMP28Q9H239 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC14.22□□□□□ -0.13
MMP28Q9H239 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
MMP28Q9H239 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC14.22□□□□□ -0.13
MMP28Q9H239 AP000867.4-201ENST00000641616 219 ntBASIC14.22□□□□□ -0.13
MMP28Q9H239 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
MMP28Q9H239 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC14.22□□□□□ -0.13
MMP28Q9H239 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
MMP28Q9H239 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC14.22□□□□□ -0.13
MMP28Q9H239 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC14.22□□□□□ -0.13
MMP28Q9H239 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
MMP28Q9H239 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
MMP28Q9H239 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
MMP28Q9H239 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
MMP28Q9H239 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
MMP28Q9H239 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
MMP28Q9H239 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
MMP28Q9H239 AC132938.5-201ENST00000624980 1813 ntBASIC14.22□□□□□ -0.13
MMP28Q9H239 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC14.22□□□□□ -0.13
MMP28Q9H239 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC14.22□□□□□ -0.13
MMP28Q9H239 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC14.22□□□□□ -0.13
MMP28Q9H239 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
MMP28Q9H239 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
MMP28Q9H239 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
MMP28Q9H239 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
MMP28Q9H239 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
MMP28Q9H239 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
MMP28Q9H239 MARS-233ENST00000628866 2583 ntTSL 5 BASIC14.22□□□□□ -0.13
MMP28Q9H239 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
MMP28Q9H239 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
MMP28Q9H239 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC14.22□□□□□ -0.13
MMP28Q9H239 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
MMP28Q9H239 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
MMP28Q9H239 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC14.21□□□□□ -0.13
MMP28Q9H239 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC14.21□□□□□ -0.13
MMP28Q9H239 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
MMP28Q9H239 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC14.21□□□□□ -0.13
MMP28Q9H239 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC14.21□□□□□ -0.13
MMP28Q9H239 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
MMP28Q9H239 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
MMP28Q9H239 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
MMP28Q9H239 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
MMP28Q9H239 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC14.21□□□□□ -0.13
MMP28Q9H239 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
MMP28Q9H239 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
MMP28Q9H239 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC14.21□□□□□ -0.13
MMP28Q9H239 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
MMP28Q9H239 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
MMP28Q9H239 MED16-201ENST00000269814 1199 ntTSL 5 BASIC14.21□□□□□ -0.13
MMP28Q9H239 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
MMP28Q9H239 EMD-201ENST00000369835 966 ntTSL 3 BASIC14.21□□□□□ -0.13
MMP28Q9H239 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
MMP28Q9H239 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC14.21□□□□□ -0.13
MMP28Q9H239 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC14.21□□□□□ -0.13
MMP28Q9H239 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC14.21□□□□□ -0.13
MMP28Q9H239 AC079781.3-201ENST00000449110 356 ntBASIC14.21□□□□□ -0.13
MMP28Q9H239 AC132008.2-207ENST00000454517 770 ntBASIC14.21□□□□□ -0.13
MMP28Q9H239 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
MMP28Q9H239 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC14.21□□□□□ -0.13
MMP28Q9H239 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC14.21□□□□□ -0.13
MMP28Q9H239 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC14.21□□□□□ -0.13
MMP28Q9H239 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
MMP28Q9H239 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC14.21□□□□□ -0.13
MMP28Q9H239 AL139011.1-202ENST00000642063 584 ntBASIC14.21□□□□□ -0.13
MMP28Q9H239 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC14.21□□□□□ -0.13
MMP28Q9H239 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
MMP28Q9H239 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
MMP28Q9H239 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
MMP28Q9H239 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC14.21□□□□□ -0.13
MMP28Q9H239 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
MMP28Q9H239 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
MMP28Q9H239 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
MMP28Q9H239 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
MMP28Q9H239 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC14.21□□□□□ -0.14
MMP28Q9H239 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC14.21□□□□□ -0.14
MMP28Q9H239 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
MMP28Q9H239 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms