Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
RPAP1Q9BWH6 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC19.33■□□□□ 0.69
RPAP1Q9BWH6 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
RPAP1Q9BWH6 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.68
RPAP1Q9BWH6 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
RPAP1Q9BWH6 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
RPAP1Q9BWH6 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
RPAP1Q9BWH6 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
RPAP1Q9BWH6 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC19.33■□□□□ 0.68
RPAP1Q9BWH6 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.68
RPAP1Q9BWH6 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
RPAP1Q9BWH6 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.68
RPAP1Q9BWH6 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC19.33■□□□□ 0.68
RPAP1Q9BWH6 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
RPAP1Q9BWH6 MBP-202ENST00000355994 2772 ntTSL 5 BASIC19.33■□□□□ 0.68
RPAP1Q9BWH6 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC19.33■□□□□ 0.68
RPAP1Q9BWH6 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC19.32■□□□□ 0.68
RPAP1Q9BWH6 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
RPAP1Q9BWH6 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC19.32■□□□□ 0.68
RPAP1Q9BWH6 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC19.32■□□□□ 0.68
RPAP1Q9BWH6 INE1-201ENST00000456273 945 ntBASIC19.32■□□□□ 0.68
RPAP1Q9BWH6 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
RPAP1Q9BWH6 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC19.32■□□□□ 0.68
RPAP1Q9BWH6 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
RPAP1Q9BWH6 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC19.32■□□□□ 0.68
RPAP1Q9BWH6 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
RPAP1Q9BWH6 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC19.32■□□□□ 0.68
RPAP1Q9BWH6 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC19.32■□□□□ 0.68
RPAP1Q9BWH6 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
RPAP1Q9BWH6 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
RPAP1Q9BWH6 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RPAP1Q9BWH6 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC19.32■□□□□ 0.68
RPAP1Q9BWH6 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC19.32■□□□□ 0.68
RPAP1Q9BWH6 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RPAP1Q9BWH6 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC19.32■□□□□ 0.68
RPAP1Q9BWH6 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
RPAP1Q9BWH6 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC19.32■□□□□ 0.68
RPAP1Q9BWH6 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
RPAP1Q9BWH6 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RPAP1Q9BWH6 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RPAP1Q9BWH6 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RPAP1Q9BWH6 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RPAP1Q9BWH6 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RPAP1Q9BWH6 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
RPAP1Q9BWH6 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RPAP1Q9BWH6 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
RPAP1Q9BWH6 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
RPAP1Q9BWH6 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC19.32■□□□□ 0.68
RPAP1Q9BWH6 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC19.32■□□□□ 0.68
RPAP1Q9BWH6 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC19.32■□□□□ 0.68
RPAP1Q9BWH6 IGHV3-71-201ENST00000523324 359 ntBASIC19.32■□□□□ 0.68
RPAP1Q9BWH6 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
RPAP1Q9BWH6 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC19.32■□□□□ 0.68
RPAP1Q9BWH6 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RPAP1Q9BWH6 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RPAP1Q9BWH6 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
RPAP1Q9BWH6 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RPAP1Q9BWH6 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RPAP1Q9BWH6 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RPAP1Q9BWH6 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC19.31■□□□□ 0.68
RPAP1Q9BWH6 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RPAP1Q9BWH6 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RPAP1Q9BWH6 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC19.31■□□□□ 0.68
RPAP1Q9BWH6 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC19.31■□□□□ 0.68
RPAP1Q9BWH6 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
RPAP1Q9BWH6 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
RPAP1Q9BWH6 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RPAP1Q9BWH6 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RPAP1Q9BWH6 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RPAP1Q9BWH6 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RPAP1Q9BWH6 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RPAP1Q9BWH6 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
RPAP1Q9BWH6 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RPAP1Q9BWH6 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
RPAP1Q9BWH6 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
RPAP1Q9BWH6 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
RPAP1Q9BWH6 AC079776.1-201ENST00000401540 1152 ntBASIC19.31■□□□□ 0.68
RPAP1Q9BWH6 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC19.31■□□□□ 0.68
RPAP1Q9BWH6 AL512384.1-201ENST00000406683 331 ntBASIC19.31■□□□□ 0.68
RPAP1Q9BWH6 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RPAP1Q9BWH6 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RPAP1Q9BWH6 SRD5A3P1-201ENST00000603021 949 ntBASIC19.31■□□□□ 0.68
RPAP1Q9BWH6 AC008494.3-201ENST00000606615 944 ntBASIC19.31■□□□□ 0.68
RPAP1Q9BWH6 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC19.31■□□□□ 0.68
RPAP1Q9BWH6 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RPAP1Q9BWH6 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC19.31■□□□□ 0.68
RPAP1Q9BWH6 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
RPAP1Q9BWH6 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RPAP1Q9BWH6 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC19.3■□□□□ 0.68
RPAP1Q9BWH6 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
RPAP1Q9BWH6 AP005117.1-202ENST00000581724 1908 ntBASIC19.3■□□□□ 0.68
RPAP1Q9BWH6 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
RPAP1Q9BWH6 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
RPAP1Q9BWH6 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
RPAP1Q9BWH6 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
RPAP1Q9BWH6 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
RPAP1Q9BWH6 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
RPAP1Q9BWH6 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
RPAP1Q9BWH6 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC19.3■□□□□ 0.68
RPAP1Q9BWH6 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms