Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC12.04□□□□□ -0.48
LINC00477Q96M19 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC12.04□□□□□ -0.48
LINC00477Q96M19 AC087481.3-201ENST00000602886 1894 ntBASIC12.04□□□□□ -0.48
LINC00477Q96M19 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
LINC00477Q96M19 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00477Q96M19 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC12.03□□□□□ -0.48
LINC00477Q96M19 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00477Q96M19 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00477Q96M19 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00477Q96M19 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00477Q96M19 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC12.03□□□□□ -0.48
LINC00477Q96M19 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC12.03□□□□□ -0.48
LINC00477Q96M19 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC12.03□□□□□ -0.48
LINC00477Q96M19 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC12.03□□□□□ -0.48
LINC00477Q96M19 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC12.03□□□□□ -0.48
LINC00477Q96M19 SSR4P1-203ENST00000599569 2260 ntBASIC12.03□□□□□ -0.48
LINC00477Q96M19 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00477Q96M19 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC12.03□□□□□ -0.48
LINC00477Q96M19 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC12.03□□□□□ -0.48
LINC00477Q96M19 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
LINC00477Q96M19 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC12.03□□□□□ -0.48
LINC00477Q96M19 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC12.03□□□□□ -0.48
LINC00477Q96M19 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00477Q96M19 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC12.03□□□□□ -0.48
LINC00477Q96M19 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00477Q96M19 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00477Q96M19 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
LINC00477Q96M19 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00477Q96M19 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC12.03□□□□□ -0.48
LINC00477Q96M19 LCK-206ENST00000373564 2137 ntTSL 5 BASIC12.03□□□□□ -0.48
LINC00477Q96M19 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
LINC00477Q96M19 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00477Q96M19 AC098859.1-201ENST00000502915 1238 ntBASIC12.03□□□□□ -0.48
LINC00477Q96M19 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC12.03□□□□□ -0.48
LINC00477Q96M19 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00477Q96M19 SMN2-210ENST00000511812 867 ntTSL 2 BASIC12.03□□□□□ -0.48
LINC00477Q96M19 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC12.03□□□□□ -0.48
LINC00477Q96M19 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC12.03□□□□□ -0.48
LINC00477Q96M19 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC12.03□□□□□ -0.48
LINC00477Q96M19 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00477Q96M19 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC12.03□□□□□ -0.48
LINC00477Q96M19 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00477Q96M19 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00477Q96M19 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00477Q96M19 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00477Q96M19 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00477Q96M19 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC12.03□□□□□ -0.48
LINC00477Q96M19 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00477Q96M19 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC12.03□□□□□ -0.48
LINC00477Q96M19 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00477Q96M19 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC12.03□□□□□ -0.48
LINC00477Q96M19 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00477Q96M19 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC12.03□□□□□ -0.48
LINC00477Q96M19 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00477Q96M19 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00477Q96M19 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
LINC00477Q96M19 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00477Q96M19 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC12.03□□□□□ -0.48
LINC00477Q96M19 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC12.03□□□□□ -0.48
LINC00477Q96M19 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
LINC00477Q96M19 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00477Q96M19 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00477Q96M19 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00477Q96M19 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00477Q96M19 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC12.03□□□□□ -0.48
LINC00477Q96M19 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
LINC00477Q96M19 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
LINC00477Q96M19 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC12.02□□□□□ -0.48
LINC00477Q96M19 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
LINC00477Q96M19 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.48
LINC00477Q96M19 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC12.02□□□□□ -0.48
LINC00477Q96M19 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
LINC00477Q96M19 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC12.02□□□□□ -0.48
LINC00477Q96M19 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
LINC00477Q96M19 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.48
LINC00477Q96M19 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
LINC00477Q96M19 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
LINC00477Q96M19 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
LINC00477Q96M19 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC12.02□□□□□ -0.49
LINC00477Q96M19 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
LINC00477Q96M19 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
LINC00477Q96M19 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC12.02□□□□□ -0.49
LINC00477Q96M19 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
LINC00477Q96M19 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC12.02□□□□□ -0.49
LINC00477Q96M19 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
LINC00477Q96M19 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC12.02□□□□□ -0.49
LINC00477Q96M19 GPX1P2-201ENST00000429271 606 ntBASIC12.02□□□□□ -0.49
LINC00477Q96M19 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC12.02□□□□□ -0.49
LINC00477Q96M19 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC12.02□□□□□ -0.49
LINC00477Q96M19 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC12.02□□□□□ -0.49
LINC00477Q96M19 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
LINC00477Q96M19 EHF-205ENST00000527935 557 ntTSL 2 BASIC12.02□□□□□ -0.49
LINC00477Q96M19 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
LINC00477Q96M19 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC12.02□□□□□ -0.49
LINC00477Q96M19 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC12.02□□□□□ -0.49
LINC00477Q96M19 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC12.02□□□□□ -0.49
LINC00477Q96M19 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC12.02□□□□□ -0.49
LINC00477Q96M19 AC243562.2-201ENST00000561247 970 ntBASIC12.02□□□□□ -0.49
LINC00477Q96M19 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC12.02□□□□□ -0.49
LINC00477Q96M19 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC12.02□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 305.1 ms