Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC16.61■□□□□ 0.25
ATG4AQ8WYN0 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
ATG4AQ8WYN0 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
ATG4AQ8WYN0 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC16.6■□□□□ 0.25
ATG4AQ8WYN0 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
ATG4AQ8WYN0 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
ATG4AQ8WYN0 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
ATG4AQ8WYN0 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC16.6■□□□□ 0.25
ATG4AQ8WYN0 AC006058.4-201ENST00000624016 1670 ntBASIC16.6■□□□□ 0.25
ATG4AQ8WYN0 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
ATG4AQ8WYN0 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
ATG4AQ8WYN0 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
ATG4AQ8WYN0 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
ATG4AQ8WYN0 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
ATG4AQ8WYN0 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC16.6■□□□□ 0.25
ATG4AQ8WYN0 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC16.6■□□□□ 0.25
ATG4AQ8WYN0 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC16.6■□□□□ 0.25
ATG4AQ8WYN0 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC16.6■□□□□ 0.25
ATG4AQ8WYN0 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC16.6■□□□□ 0.25
ATG4AQ8WYN0 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC16.6■□□□□ 0.25
ATG4AQ8WYN0 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC16.6■□□□□ 0.25
ATG4AQ8WYN0 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC16.6■□□□□ 0.25
ATG4AQ8WYN0 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
ATG4AQ8WYN0 AC061975.2-201ENST00000581722 295 ntBASIC16.6■□□□□ 0.25
ATG4AQ8WYN0 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC16.6■□□□□ 0.25
ATG4AQ8WYN0 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
ATG4AQ8WYN0 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC16.6■□□□□ 0.25
ATG4AQ8WYN0 AC073389.1-201ENST00000595595 795 ntBASIC16.6■□□□□ 0.25
ATG4AQ8WYN0 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC16.6■□□□□ 0.25
ATG4AQ8WYN0 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
ATG4AQ8WYN0 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
ATG4AQ8WYN0 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
ATG4AQ8WYN0 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
ATG4AQ8WYN0 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
ATG4AQ8WYN0 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
ATG4AQ8WYN0 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
ATG4AQ8WYN0 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
ATG4AQ8WYN0 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
ATG4AQ8WYN0 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
ATG4AQ8WYN0 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
ATG4AQ8WYN0 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC16.6■□□□□ 0.25
ATG4AQ8WYN0 BNIP3P1-202ENST00000550043 1585 ntBASIC16.6■□□□□ 0.25
ATG4AQ8WYN0 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
ATG4AQ8WYN0 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
ATG4AQ8WYN0 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ATG4AQ8WYN0 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ATG4AQ8WYN0 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
ATG4AQ8WYN0 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ATG4AQ8WYN0 MECR-202ENST00000373791 2416 ntTSL 2 BASIC16.59■□□□□ 0.25
ATG4AQ8WYN0 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
ATG4AQ8WYN0 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
ATG4AQ8WYN0 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
ATG4AQ8WYN0 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
ATG4AQ8WYN0 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
ATG4AQ8WYN0 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC16.59■□□□□ 0.25
ATG4AQ8WYN0 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ATG4AQ8WYN0 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
ATG4AQ8WYN0 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC16.59■□□□□ 0.25
ATG4AQ8WYN0 RARRES2P8-201ENST00000566335 367 ntBASIC16.59■□□□□ 0.25
ATG4AQ8WYN0 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
ATG4AQ8WYN0 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC16.59■□□□□ 0.25
ATG4AQ8WYN0 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC16.59■□□□□ 0.25
ATG4AQ8WYN0 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
ATG4AQ8WYN0 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC16.59■□□□□ 0.25
ATG4AQ8WYN0 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
ATG4AQ8WYN0 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
ATG4AQ8WYN0 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
ATG4AQ8WYN0 CELP-203ENST00000624767 2414 ntTSL 5 BASIC16.59■□□□□ 0.25
ATG4AQ8WYN0 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ATG4AQ8WYN0 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC16.59■□□□□ 0.25
ATG4AQ8WYN0 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC16.59■□□□□ 0.25
ATG4AQ8WYN0 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC16.59■□□□□ 0.25
ATG4AQ8WYN0 RER1-203ENST00000378513 3000 ntTSL 3 BASIC16.59■□□□□ 0.25
ATG4AQ8WYN0 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC16.59■□□□□ 0.25
ATG4AQ8WYN0 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ATG4AQ8WYN0 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ATG4AQ8WYN0 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC16.59■□□□□ 0.25
ATG4AQ8WYN0 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
ATG4AQ8WYN0 AC112693.3-201ENST00000624819 1983 ntBASIC16.58■□□□□ 0.25
ATG4AQ8WYN0 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
ATG4AQ8WYN0 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
ATG4AQ8WYN0 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
ATG4AQ8WYN0 C18orf15-201ENST00000623680 2534 ntBASIC16.58■□□□□ 0.25
ATG4AQ8WYN0 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC16.58■□□□□ 0.25
ATG4AQ8WYN0 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
ATG4AQ8WYN0 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC16.58■□□□□ 0.24
ATG4AQ8WYN0 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
ATG4AQ8WYN0 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
ATG4AQ8WYN0 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
ATG4AQ8WYN0 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
ATG4AQ8WYN0 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC16.58■□□□□ 0.24
ATG4AQ8WYN0 AL590627.1-203ENST00000421194 1026 ntBASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms