Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
CCDC54Q8NEL0 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC54Q8NEL0 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
CCDC54Q8NEL0 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC54Q8NEL0 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC54Q8NEL0 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC14.01□□□□□ -0.17
CCDC54Q8NEL0 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC54Q8NEL0 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC54Q8NEL0 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC54Q8NEL0 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC14.01□□□□□ -0.17
CCDC54Q8NEL0 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC54Q8NEL0 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC14.01□□□□□ -0.17
CCDC54Q8NEL0 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC54Q8NEL0 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC14.01□□□□□ -0.17
CCDC54Q8NEL0 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC14.01□□□□□ -0.17
CCDC54Q8NEL0 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC54Q8NEL0 BCAR1-209ENST00000546196 1340 ntBASIC14.01□□□□□ -0.17
CCDC54Q8NEL0 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
CCDC54Q8NEL0 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC14.01□□□□□ -0.17
CCDC54Q8NEL0 SMN2-210ENST00000511812 867 ntTSL 2 BASIC14.01□□□□□ -0.17
CCDC54Q8NEL0 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC14.01□□□□□ -0.17
CCDC54Q8NEL0 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC14.01□□□□□ -0.17
CCDC54Q8NEL0 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC14.01□□□□□ -0.17
CCDC54Q8NEL0 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC14.01□□□□□ -0.17
CCDC54Q8NEL0 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC14.01□□□□□ -0.17
CCDC54Q8NEL0 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC14.01□□□□□ -0.17
CCDC54Q8NEL0 AC073389.1-201ENST00000595595 795 ntBASIC14.01□□□□□ -0.17
CCDC54Q8NEL0 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC14.01□□□□□ -0.17
CCDC54Q8NEL0 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC54Q8NEL0 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC54Q8NEL0 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC54Q8NEL0 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
CCDC54Q8NEL0 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC54Q8NEL0 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC54Q8NEL0 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC14.01□□□□□ -0.17
CCDC54Q8NEL0 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC54Q8NEL0 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC54Q8NEL0 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC54Q8NEL0 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC54Q8NEL0 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC14.01□□□□□ -0.17
CCDC54Q8NEL0 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC14.01□□□□□ -0.17
CCDC54Q8NEL0 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
CCDC54Q8NEL0 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC54Q8NEL0 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC54Q8NEL0 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
CCDC54Q8NEL0 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC14□□□□□ -0.17
CCDC54Q8NEL0 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC54Q8NEL0 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC14□□□□□ -0.17
CCDC54Q8NEL0 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC14□□□□□ -0.17
CCDC54Q8NEL0 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC14□□□□□ -0.17
CCDC54Q8NEL0 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC54Q8NEL0 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC14□□□□□ -0.17
CCDC54Q8NEL0 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC14□□□□□ -0.17
CCDC54Q8NEL0 AC025580.3-201ENST00000617932 1424 ntBASIC14□□□□□ -0.17
CCDC54Q8NEL0 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC54Q8NEL0 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC54Q8NEL0 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC14□□□□□ -0.17
CCDC54Q8NEL0 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC14□□□□□ -0.17
CCDC54Q8NEL0 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC14□□□□□ -0.17
CCDC54Q8NEL0 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC14□□□□□ -0.17
CCDC54Q8NEL0 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC54Q8NEL0 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC54Q8NEL0 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC54Q8NEL0 BEX3-201ENST00000361298 921 ntTSL 2 BASIC14□□□□□ -0.17
CCDC54Q8NEL0 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC14□□□□□ -0.17
CCDC54Q8NEL0 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC54Q8NEL0 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC14□□□□□ -0.17
CCDC54Q8NEL0 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC14□□□□□ -0.17
CCDC54Q8NEL0 AC098859.1-201ENST00000502915 1238 ntBASIC14□□□□□ -0.17
CCDC54Q8NEL0 PP7080-204ENST00000510714 601 ntTSL 3 BASIC14□□□□□ -0.17
CCDC54Q8NEL0 AC112191.1-201ENST00000523689 701 ntBASIC14□□□□□ -0.17
CCDC54Q8NEL0 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC54Q8NEL0 KRT19P2-202ENST00000557173 1012 ntBASIC14□□□□□ -0.17
CCDC54Q8NEL0 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC14□□□□□ -0.17
CCDC54Q8NEL0 AC068137.2-201ENST00000605408 478 ntBASIC14□□□□□ -0.17
CCDC54Q8NEL0 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC14□□□□□ -0.17
CCDC54Q8NEL0 AC004877.2-201ENST00000623941 599 ntBASIC14□□□□□ -0.17
CCDC54Q8NEL0 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC14□□□□□ -0.17
CCDC54Q8NEL0 HADH-212ENST00000638621 741 ntTSL 5 BASIC14□□□□□ -0.17
CCDC54Q8NEL0 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC14□□□□□ -0.17
CCDC54Q8NEL0 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
CCDC54Q8NEL0 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC54Q8NEL0 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC54Q8NEL0 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC54Q8NEL0 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC14□□□□□ -0.17
CCDC54Q8NEL0 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC54Q8NEL0 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC14□□□□□ -0.17
CCDC54Q8NEL0 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC54Q8NEL0 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC14□□□□□ -0.17
CCDC54Q8NEL0 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC54Q8NEL0 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC54Q8NEL0 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC54Q8NEL0 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC14□□□□□ -0.17
CCDC54Q8NEL0 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC54Q8NEL0 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC54Q8NEL0 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC54Q8NEL0 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC54Q8NEL0 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC13.99□□□□□ -0.17
CCDC54Q8NEL0 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms